Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05393 ATGTTTCAATTAGTTCAGCTTGTTGACGTTACAGCTTTGTTAGTTGAAAATGGGAAATTCCTCCTTTCTGCTAAGAGGACACGGAGAACAACTTACACCGAGTATGTCATTTCCATGGATGCTGACAACATCTCTAGATCAAGTAATACTTACATTGGAAAGCTGAGATCAAACTTTCTTGGTACAAAATTCATTATATATGATACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGGAAGACGAGCCGCAGATTTTATTCTAAAAAGGTCTCGCCTAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAATTAAACGTGCTTGGAACTCGAGGCCCAAGGAAGATGCACTGCATTATGCATTCAATACCAGCTTCAGCACTTGATGCGGGTGGCACTGTTCCTGGCCAACCAGAGCTCCTTCCCCGTTCCCTGGAGGACTCATTTCGGAGCATCTCATTTTCAAAGTCTCTAGATCATTCAATCGAGTTCAGCAGCGCACGATTTTCTGAGATTGGGGGATCCTGTAATGAGGATGAGGATGGCAAGATGAGACCCTTGGTTCTGAAAAACAAGCCACCAAGATGGCATGAACAGTTACAATGTTGGTGCCTTAATTTCCGGGGACGAGTAACTGTTGCATCAGTTAAAAACTTTCAGTTGATAGCTGCCACCCAACCAGCTGCTGGAGCACCCACACCATCTCAACCAGCTCCACCGGAGCATGATAAAATTATTCTGCAGTTTGGCAAAGTTGGGAAAGATATGTTCACGATGGATTATCGGTATCCTTTATCTGCATTCCAAGCATTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG 882 0.4422 MFQLVQLVDVTALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPASALDAGGTVPGQPELLPRSLEDSFRSISFSKSLDHSIEFSSARFSEIGGSCNEDEDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05393 293 ProSitePatterns Tub family signature 1. 215 228 IPR018066 -
Seca5g05393 293 ProSitePatterns Tub family signature 2. 278 293 IPR018066 -
Seca5g05393 293 Gene3D Tubby Protein; Chain A 4 287 IPR025659 -
Seca5g05393 293 PANTHER TUBBY-RELATED 14 291 - -
Seca5g05393 293 SUPERFAMILY Tubby C-terminal domain-like 16 293 IPR025659 -
Seca5g05393 293 PRINTS Tubby superfamily signature 103 130 IPR000007 -
Seca5g05393 293 PRINTS Tubby superfamily signature 215 231 IPR000007 -
Seca5g05393 293 PRINTS Tubby superfamily signature 51 75 IPR000007 -
Seca5g05393 293 PRINTS Tubby superfamily signature 197 214 IPR000007 -
Seca5g05393 293 PRINTS Tubby superfamily signature 35 51 IPR000007 -
Seca5g05393 293 PRINTS Tubby superfamily signature 250 269 IPR000007 -
Seca5g05393 293 PRINTS Tubby superfamily signature 271 293 IPR000007 -
Seca5g05393 293 Pfam Tub family 15 288 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05393 Seca-Chr5 110891077 110893190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05393 12 293 TUB Transcription Factor Family AT1G43640 69.048 5.47e-142 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca5g05393 Tub 1.3e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05393 K19600 - gmx:100814578 539.265