Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05389 ATGGCGAAGATGGCGAGAAGTAGGAATGAGGATCTGCGAGGAGAGTGTTCTCTTTCGGCTGATGAGGTTTGGAAGGAGATCGTCGCCGGCAGCACTGATCAACAGAATATCACAGTAACACTTGAGGATTTCCTCACCAAGCCTGTCACTGTCACAGACCAAGACACCATACTCCTCCCTCCTCAAACTCAAAGCAATGAGAAGAATGGGATTGTTGCTGTTGGAGGAAGAAAGAGGAGGGCGGTGGCTGTGGAGGAAAGCCTTGATAAGGCCACTCTTCAGAAACAGAGAAGAATGATAAAAAACAGAGAGTCTGCAGCTAGGTCCAGGGAACGCAAGCAGGCAGCTTACACACTTGAGCTAGAGTCTCTGGTTACACAACTGGAGGAAGAGAATGCTCGATTGCAGAGGGAAGAGGCTGAAAACAAAAAGCAGAGGTTTAACCAGCTGATGAAGTGCCTCATCCCAGTTGTGGAGAAGCGTAAACCAAGACGAATGCTTCGGAGAGTGAATTCTGTCCATTGGTGA 528 0.4867 MAKMARSRNEDLRGECSLSADEVWKEIVAGSTDQQNITVTLEDFLTKPVTVTDQDTILLPPQTQSNEKNGIVAVGGRKRRAVAVEESLDKATLQKQRRMIKNRESAARSRERKQAAYTLELESLVTQLEEENARLQREEAENKKQRFNQLMKCLIPVVEKRKPRRMLRRVNSVHW. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05389 175 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 97 112 IPR004827 GO:0003700|GO:0006355
Seca5g05389 175 Gene3D - 93 150 - -
Seca5g05389 175 Coils Coil 118 150 - -
Seca5g05389 175 CDD bZIP_plant_BZIP46 94 144 - -
Seca5g05389 175 SUPERFAMILY Leucine zipper domain 94 145 IPR046347 GO:0003700|GO:0006355
Seca5g05389 175 Pfam bZIP transcription factor 91 146 IPR004827 GO:0003700|GO:0006355
Seca5g05389 175 SMART brlzneu 90 153 IPR004827 GO:0003700|GO:0006355
Seca5g05389 175 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 18 171 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05389 Seca-Chr5 110872465 110874121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05389 19 175 bZIP Transcription Factor Family AT5G44080 42.857 1.93e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca5g05389 bZIP_1 3e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05389 K14432 - cit:102608488 173.326