Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05388 ATGCAAGTGGAGATTCGAAGAAGCAGAACCAAAATGAGTGTGAAGATAAAATTTGAGATCCTAAGCAGAAAATGCATCAAACCATCCACACCCACACCACCGCATCTTAAAACCTTCCAACTCTCTCTGCTTGACCAGCTTTCTCCTAATATCCATGGCAACACCACCCTCTTCTACCCTCCCACTCCTACCAATTTCTCCACCAAATCCCATCTTCTTCAAAACTTCCTCTCTCAAATGCTAACCCTTTTCTACCCTCTCGCCGGACGCTTCCAAGACGACGCTGCCACCATTGACTGCAGCGACCAAGGCGTCTTCTTCATCGAAGCTCGAACAAACACCACTTTCTCTGACATCCTCACCAACCCCGATTTCAACACCCTCGAATGCCTCATCCCTACCACCGACAACGAAACCATGGCAATGTCAAACGGTTCCATGCTCCTTGTCCGCTTCACCTTGTTCGGTTGCGGCGGCACCACCTTAAGCATCTCCCTCACCCACAAGATCGCCGATTTTGCAACCTTGATCACACTCCTTAACACCTGGACCGCCGCGTGCGGCAGAAACACCCAACCGGTGGTCCCAGAACTGGCCGCCGGCGCTGCTCTGTTTCCTCCAAGAGAGATTCCCGGCATGTCAGCTTCCGTAAACACTGCCGCCGAGAAGTTCACGGCGAGAAGGTTCGTTTTCGGCGCGTCCAAGGTTGAAGAGCTCAAGAACAGAGTCAAAAGCGCACTCCAAGAGAGTGATGGCATGATGTTTGAGCCGTCGAGGGTGGAGGTGGTGGTAGCACTCATTTGGAGATGTGCTTTGTTAGCGAAAACGGCGTCGTTTAGGCCTTCGGTTTTGTTCCAAGCGGTGAACCTCCGTCCGCGGATGGAGCCGGCGGTTCCTGAGACGGCGGTTGGGAACTTTGTGTGGCCATTCGCGGTGACGGTGGAGGAAGAGAGCCACGTGGAGTTGCATGAGTTGGTGAGGAGGATGAGGAAGTCTATGAGGGAGTTTGTTGAGAAGAAGGTGGAGAAGTTCAAAGAGGGAGGTGCATTTGGAGTGGTGATGGAGAGTCTTAATGAGAGGGCTCAACTTTTGAAGAAGAAGGACAATGTTGTGGTTTATAAGTGTTCGAGTTGGTGTAAGTATGGAGTGCTTGATGTGGATTTTGGATGGGGGAAGGCTGTGTGGATGTGCAGCGTGAATAAGCTGGTTAGTAATACAATTTCCTTGATGGATACGAGGGATAATGGTGGAGTTGAAGCTTCTCTCACTCTCAATGAGGAAGAGATGGCCTTACTTGAACAACATCACGAGCTGCTACACTATGCCCTGCTTAATCCTAGCATTATCATGTGA 1353 0.507 MQVEIRRSRTKMSVKIKFEILSRKCIKPSTPTPPHLKTFQLSLLDQLSPNIHGNTTLFYPPTPTNFSTKSHLLQNFLSQMLTLFYPLAGRFQDDAATIDCSDQGVFFIEARTNTTFSDILTNPDFNTLECLIPTTDNETMAMSNGSMLLVRFTLFGCGGTTLSISLTHKIADFATLITLLNTWTAACGRNTQPVVPELAAGAALFPPREIPGMSASVNTAAEKFTARRFVFGASKVEELKNRVKSALQESDGMMFEPSRVEVVVALIWRCALLAKTASFRPSVLFQAVNLRPRMEPAVPETAVGNFVWPFAVTVEEESHVELHELVRRMRKSMREFVEKKVEKFKEGGAFGVVMESLNERAQLLKKKDNVVVYKCSSWCKYGVLDVDFGWGKAVWMCSVNKLVSNTISLMDTRDNGGVEASLTLNEEEMALLEQHHELLHYALLNPSIIM. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05388 450 Gene3D - 221 442 IPR023213 -
Seca5g05388 450 Gene3D - 14 212 IPR023213 -
Seca5g05388 450 Pfam Transferase family 17 438 - -
Seca5g05388 450 PANTHER F21J9.9 19 441 - -
Seca5g05388 450 SUPERFAMILY CoA-dependent acyltransferases 277 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05388 Seca-Chr5 110866827 110868551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05388 16 434 Monolignol Biosynthesis Gene Families AT5G48930 23.851 1.05e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05388 - - pcin:129311859 571.622