Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05377 ATGAAGGAGGAGAGATGCAATAACGTGGTGAAGCCAACGGTGCTGATGGTGGGTGTGCAGATAACATTTGCTGGGATGAATGTCCTCTACAAGCTCGCCGTGAACGATGGGATGAACTTGAGGATCGTTATTGCATACCGCTTCCTATTCGCTACTGCTTTCATAGCTCCACTTGCTCTCATTCTTGAAAGGAACAAGACCACAAAGATGACTTGGACGGTACTCTTTCAGTCCTTTCTCTGCGGTTTGTTTGGAGGATCATTAGCTCAAAACTTCTACTTAGAGTCTCTGGCTTTTACTTCTTTAACGTTTACATCCGCCATGTTCAACCTTACGCCCGCCATAACCTTTATCATTGCCGTTTCTCTCGGTTTGGAAAAAATAAATTTGAGAAGGGCAGGAGGAAAGGCGAAGGTACTAGGTACATTAATTGGAATTGGTGGGGCAATGATACTGACTTTCATTAAAGGCATGGAAATCAAGATAGGGTCTTTCCACTTAAACCTTTTACATCATCAAAACGGACCGCATGCTAATACTACCACCGGTGGTAGTAAGCCTGTCTTGGGTGCTCTCTGTGGCTTGGCTTGTAGCGTCTGTTACGCATTGTGGCTCATTATTCAGGCAAAAATGACAAAGAGATACCCGAATCATTACTCAGGCACCGCGTTGATGTCTTTTTGGTCGTCACTGCTATCCATTGGGTTTGCTCTTTGCTTTGAAAGGGATTTGAGTCAGTGGAGGTTGGGTTGGAATATTAGGCTTCTAACTGTTTCTTATGCGGGTATAGTGATTTCTGGAGTAGCGGTGGTTGTAATGTCATGGTGTGGGCACATGAGAGGTCCATTGTTTGTCTCTATTTTTAACCCTCTAGTGCTTGTGATATTGGCCATGGTTGATTCTACGATGTTGAACGAGAAGCTACACCTTGGAAGCATAATCGGAGCAGTGTTGATTATGTGTTGCTTATACGCGGTTTTATGGGGTAATAGCAAAGAGGTGAAGAAAATGAATAAATCAGTGCCATCACAAAGCCCCCATGAATCACATACAGTCAAAATAGTCATGAGGACAGCAGAAGAGGATAAGCATCCATAA 1098 0.4372 MKEERCNNVVKPTVLMVGVQITFAGMNVLYKLAVNDGMNLRIVIAYRFLFATAFIAPLALILERNKTTKMTWTVLFQSFLCGLFGGSLAQNFYLESLAFTSLTFTSAMFNLTPAITFIIAVSLGLEKINLRRAGGKAKVLGTLIGIGGAMILTFIKGMEIKIGSFHLNLLHHQNGPHANTTTGGSKPVLGALCGLACSVCYALWLIIQAKMTKRYPNHYSGTALMSFWSSLLSIGFALCFERDLSQWRLGWNIRLLTVSYAGIVISGVAVVVMSWCGHMRGPLFVSIFNPLVLVILAMVDSTMLNEKLHLGSIIGAVLIMCCLYAVLWGNSKEVKKMNKSVPSQSPHESHTVKIVMRTAEEDKHP. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05377 365 Pfam EamA-like transporter family 189 327 IPR000620 GO:0016020
Seca5g05377 365 Pfam EamA-like transporter family 13 153 IPR000620 GO:0016020
Seca5g05377 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 332 - -
Seca5g05377 365 PANTHER WAT1-RELATED PROTEIN 11 337 IPR030184 GO:0016020|GO:0022857
Seca5g05377 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05377 Seca-Chr5 110697858 110708358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05377 10 337 Nodulin-like Gene Family AT1G68170 45.122 3.73e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05377 - - gmx:100810649 507.294