Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05360 ATGCATAATTGTTACGAGGCTCTTCCGGCTAATGGGAAATTGATCATTTGTGAACCGGTGCTGCCGGAGTTAACCGATGATAGTCAGAGAACAAGAACATTGCTAGGGGGTGATATATTCACAATGACCATGTACAGACCTAAGGGAAAGCACAGAACCGAAAAACAGTTCATAGAGATTGCCACTTTTGCTGGTTTCCCTCGCTTTCGTGCCCTGTATATTGACTCATACTTTGTTGTGTTTGAGTTTCAGAAATGA 258 0.4264 MHNCYEALPANGKLIICEPVLPELTDDSQRTRTLLGGDIFTMTMYRPKGKHRTEKQFIEIATFAGFPRFRALYIDSYFVVFEFQK. 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05360 85 Gene3D Vaccinia Virus protein VP39 2 71 IPR029063 -
Seca5g05360 85 Pfam O-methyltransferase domain 1 66 IPR001077 GO:0008171
Seca5g05360 85 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 85 IPR016461 GO:0008168
Seca5g05360 85 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 82 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05360 Seca-Chr5 110535359 110535616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05360 1 85 Monolignol Biosynthesis Gene Families AT3G53140 65.882 8.12e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05360 - - aprc:113853000 130.954