Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05359 ATGGAGGTGAGGATTAAACATAGAGATGAGAGTGAGTATGAGGAGGACAGAGCAAGACTCACCATTTTGGAAGTATCCAACATGATGAGTGTCCCCATGTCCCTCATTGCAGTGATTAACCTCAAGGTCTCTGAGGCTATCTGGCAAGGTGGTTCCAACATTCCCCTCTCCGCCTCCCAGATTCTCCACCGCATTCGTCCCCACGGCGGTGGTGACGTTGACAACCTCCAACGCATCCTCCGCTTGCTCACCAGCTATGACATATTTGCAGAGCACCTGACTCCACAGAGTGGCGAAAGGAAATACTCCCTCACGTATATCGGCAAGACTCTGATTCCGGATAGCAATGGTCTATCCTACGGTGCTTACATGCTCCAACACCATCAGGAAGCGTTTATGAGAGCTTGGCCATTGGTGGGGGAGGCAGTAGAGGATCCAAAGATAGGGGCATTCAAGAAGGCGAATGGAGGAGAGGATGTGTTTCAATACTACGCCGACAGGGAAGATGCAATCAATTTATTTCATAAGGCCTTTTATGGAATGTCTGTACCCTTCATGACCAAAATGTTGGAAAACTATGACGGCTTTCAAGGGGTCCAAACACTCGTCGACGTTGGTGGCAACTCCGGTGTGTGCCTCCGTATGATCATGTCCAAATACCCAACTCTCCGAAAGGCTATTAACTATGATCTGCCCCATATGGTCGACTCTGCACAGCATATTCCAGGTGTGTAA 735 0.4912 MEVRIKHRDESEYEEDRARLTILEVSNMMSVPMSLIAVINLKVSEAIWQGGSNIPLSASQILHRIRPHGGGDVDNLQRILRLLTSYDIFAEHLTPQSGERKYSLTYIGKTLIPDSNGLSYGAYMLQHHQEAFMRAWPLVGEAVEDPKIGAFKKANGGEDVFQYYADREDAINLFHKAFYGMSVPFMTKMLENYDGFQGVQTLVDVGGNSGVCLRMIMSKYPTLRKAINYDLPHMVDSAQHIPGV. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05359 244 Gene3D Vaccinia Virus protein VP39 113 244 IPR029063 -
Seca5g05359 244 Gene3D - 3 111 IPR036388 -
Seca5g05359 244 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 244 IPR016461 GO:0008168
Seca5g05359 244 Pfam O-methyltransferase domain 140 240 IPR001077 GO:0008171
Seca5g05359 244 PANTHER O-METHYLTRANSFERASE 28 240 IPR016461 GO:0008168
Seca5g05359 244 SUPERFAMILY "Winged helix" DNA-binding domain 14 114 IPR036390 -
Seca5g05359 244 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 243 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05359 Seca-Chr5 110531443 110533422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05359 9 244 Monolignol Biosynthesis Gene Families AT3G53140 55.417 1.03e-88 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05359 - - ccaj:109819366 300.056