Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05358 ATGGGAGATAGCAATTATGTGAACCTTCCACCGGGGTTTCGGTTTTATCCAACAGATGAAGAGCTTGTAGTCCATTTCCTTCACAGAAAGGCAGCATTCTTACCTTGCCACCCTGATGTCATCCCTGATCTTGAGCTCTACTCATTTGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGAAAGCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTGAGTGAGAATGGGTATTGGAAGGCAACGGGAATGGAAGAAGCAGTGGTTAGTAGCACAGGCAATAAGAGAGTTGGCATCAAGAAATATTTTGTCTTCCATTTGGGAGAACCCTCTTCTGCTATCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCATCTTCCTCTTCATCCAAAAGAAAGCCACACCCCAAAACAGTTAGTATATATACTATTAATTCTCACGATTATAGCAAATGGGTGATATGTCGTGTTTATGAGCGCAACGGGGATGGTGATGATGGAACAGAGCTGTCTTGTTTGGATGAAGTTTTCTTGGCATTGGATGATCTTGACGAAATAAGCTTACCAAATTAA 594 0.4192 MGDSNYVNLPPGFRFYPTDEELVVHFLHRKAAFLPCHPDVIPDLELYSFDPWELDGRALAEGKQWYYYSRRTQNRVSENGYWKATGMEEAVVSSTGNKRVGIKKYFVFHLGEPSSAIKTNWIMQEYRLSDSASSSSSKRKPHPKTVSIYTINSHDYSKWVICRVYERNGDGDDGTELSCLDEVFLALDDLDEISLPN. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05358 197 SUPERFAMILY NAC domain 6 166 IPR036093 GO:0003677|GO:0006355
Seca5g05358 197 PANTHER NAC TRANSCRIPTION FACTOR 56 9 171 - -
Seca5g05358 197 Gene3D NAC domain 18 170 IPR036093 GO:0003677|GO:0006355
Seca5g05358 197 FunFam NAC domain-containing protein 104 18 170 - -
Seca5g05358 197 ProSiteProfiles NAC domain profile. 9 167 IPR003441 GO:0003677|GO:0006355
Seca5g05358 197 Pfam No apical meristem (NAM) protein 10 128 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05358 Seca-Chr5 110522857 110523607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05358 1 185 NAC Transcription Factor Family AT1G61110 41.117 1.33e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca5g05358 NAM 5.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05358 - - adu:107468597 320.087