Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05353 ATGGAGCGAGTGACTTTATCTTCTACTGCTTCCTTTCTTGTTTGGGCAATTTTGGTGCTTGATTTGGTGCTTAAGGCTTCTGGCAATGCGGAAGGTGATGCCTTGAATGCATTGAAGAGCAACTTGCAAGATCCTAACAATGTTCTTCAAAGCTGGGATGCTACCCTTGTCAATCCCTGCACATGGTTTCATGTTACATGCAATGGTGATAACAGCGTGACTCGAGTTGATCTTGGAAATGCAGACCTTTCTGGTACACTGGTTCCACAACTTGGTCAGCTCACAAATTTGCAGTACTTGGAACTTTATAGTAATAATATAACTGGAAAAATCCCAGACGAGCTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCGAATACATTGGGCAACCTTGGAAAACTACGTTTCCTGCGTCTCAATAATAACACCTTGTCTGGAGGAATTCCTTGGTCTTTGACAAAGGTTGCTTCACTGCAAGTTCTTGATCTCTCAAACAACCATCTATCAGGGGATGTCCCAGTAAATGGTTCATTTTCATTATTTACCCCCATCAGTTATCAAAACAATCCAGGCTTGAAACAACCAAACACTACTCGAACGACACCACTTTCTCCACCGTCATCAGGTTCTTCAGGTAGCAGTAATACTGGAGCTATTGCTGGAGGAGTTGCTGCCGGTGCTGCTCTGCTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGCGAAGAAGGAAACCTCAGGATCATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGCCAGCTTAAAAGGTTTTCTCTACGTGAGCTGCAAGTTGCAACCGATAATTTCAGTAACAAACATATTCTGGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGATGGCACTCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCACACAAGGTGGGGAGCTGCAATTTCAAACAGAGGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTACTCCGGCTTCGTGGTTTTTGCATGACACCTACTGAACGGTTGCTTGTGTATCCTTTCATGGTTAACGGAAGTGTAGCATCATGTTTACGAGGTACCCTTAAACGTCAAGAATCTCAACCACCACTTGACTGGCCAATACGGAAACGTATTGCTCTGGGATCTGCCAGGGGACTTGCTTATTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCTGCAAATATATTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAACTTATGGATTACAAAGATACTCATGTTACTACTGCTGTACGTGGTACCATTGGGCACATAGCACCAGAGTACCTGTCAACTGGAAAGTCTTCAGAAAAGACTGATGTTTTTGGATATGGTGTTATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCGATCTAGCGCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTTAAAGGACTTCTGAAAGACAAGAAGTTGGAAACACTGGTAGATGCAGATTTACAGGGCAATTATAATGATGAGGAGGTAGAGCAGTTAATCCAAGTGGCCTTACTATGCACACAAGGGTCTCCTATGGAAAGACCCAAGATGTCTGAGGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCTGAAAAATGGGAGCAATGGCAGAAAGAGGAGATGTTCCGGCAAGATTTTAACAACAACATGCATCACCCTAATGCAAATTGGATACTAGACTCAACTTCACATATCCAGGCAGATGAGCTATCAGGTCCTAGATGA 1860 0.4306 MERVTLSSTASFLVWAILVLDLVLKASGNAEGDALNALKSNLQDPNNVLQSWDATLVNPCTWFHVTCNGDNSVTRVDLGNADLSGTLVPQLGQLTNLQYLELYSNNITGKIPDELGNLTNLVSLDLYLNNLTGPIPNTLGNLGKLRFLRLNNNTLSGGIPWSLTKVASLQVLDLSNNHLSGDVPVNGSFSLFTPISYQNNPGLKQPNTTRTTPLSPPSSGSSGSSNTGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGTLKRQESQPPLDWPIRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLQGNYNDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEEMFRQDFNNNMHHPNANWILDSTSHIQADELSGPR. 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05353 619 FunFam Somatic embryogenesis receptor kinase 1 27 214 - -
Seca5g05353 619 Pfam Protein kinase domain 293 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05353 619 Gene3D Ribonuclease Inhibitor 28 213 IPR032675 -
Seca5g05353 619 Gene3D Transferase(Phosphotransferase) domain 1 369 589 - -
Seca5g05353 619 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Seca5g05353 619 FunFam Somatic embryogenesis receptor kinase 1 261 368 - -
Seca5g05353 619 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Seca5g05353 619 FunFam Somatic embryogenesis receptor-like kinase 1 369 589 - -
Seca5g05353 619 SUPERFAMILY Protein kinase-like (PK-like) 271 570 IPR011009 -
Seca5g05353 619 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515
Seca5g05353 619 ProSiteProfiles Protein kinase domain profile. 292 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05353 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Seca5g05353 619 SUPERFAMILY L domain-like 31 194 - -
Seca5g05353 619 Gene3D Phosphorylase Kinase; domain 1 261 368 - -
Seca5g05353 619 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 580 - -
Seca5g05353 619 SMART serkin_6 292 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05353 619 MobiDBLite consensus disorder prediction 200 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05353 Seca-Chr5 110431111 110437449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05353 13 619 Receptor kinase-like Gene Family AT4G33430 78.354 0.0 983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca5g05353 Pkinase 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05353 K13416 - gmx:100800522 1090.87