Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05348 ATGAGTCAGGTTTTCAGTGACGACGTTGTGGCAAAGACCATGGAGGAAATAGGAAGCGCAGCTTCTTCACGTCGACATGGAGATACTCTGCCACACATTCACAAGGTTGGAACTCCTCCTAAGCAGACACTTTTTCAAGAGATCAAACATTCTGTCATCGAGACTTTCTTCCATGATGACCCCTTAGGCAAATTTAAGGACAAAAGCGGATCAAGAAAGTTTATTTTGGGTGTGCAATCTCTCTTCCCCATTTTTGAATGGGCACAAGGTTACAGCTTTAAAAAATTCAAGGGTGATTTGATTGCTGGACTCACCATTGCAAGTCTCTGCATTCCTCAGGACATTGCATATGCAAAGCTTGCGAATTTGGAACCTCAGTATGGACTATACACTAGCTTTGTGGCTCCTCTAGTATACGCTTTTATGGGAAGCTCTAGAGATATTGCCATAGGACCAGTGGCTGTGGTGTCCCTCTTGCTTGGGACTATGCTTAGTGATGAGATTAGTAACACCAAAAGTCATGAATACCTGCGTCTTGCATTTACTGCCACCTTCTTTGCAGGAGTCACTCAAATGGTACTTGGAGTTTTCAGGCTTGGTTTCCTGATTGACTTTTTATCTCATGCTGCCATTGTGGGATTCATGGGTGGAGCTGCCATTACTATTGCACTGCAACAACTCAAAGGTTTACTTGGAATACAAAAGTTCACTAAGAAAACAGATATTGTTTCTGTCATGCGCTCAGTTTGGGGTTCAGTGCACCATGGGTGGAATTGGCAGACAATAGTCATTGGAATAGCATTCTTGGCCTTCCTTCTTGTAGCAAAGTATATTGCTAAAAGGAATAAGAAACTCTTTTGGGTAGCCGCAATTGCTCCTATGACCTCTGTAATACTATCTACCTTTTTTGTGTACATTACTAGGGCCGACAAAAAAGGTGTAGCCATTGTGAAACATATTAAGAAGGGTGTAAATCCAGCATCTGCTCATGAAATTTATTTCAGTGGAAACTATCTTGGTGCTGGTGTAAAAATTGGTGTGATAGCTGGTATGATAGCACTCACGGAAGCTGTAGCAATTGGGAGAACATTTGCTGCCATGAAAGACTATGCAATAGATGGTAATAAAGAAATGGTGGCAATGGGAACAATGAACATTATTGGTTCACTGACATCTTGTTATGTGGCTACAGGATCTTTTTCTCGTTCAGCAGTGAACTATATGGCTGGTTGTTCAACTGCTGTATCAAACATTGTTATGTCCATTGTTGTATTATTAACTCTCTTAGTCATTACACCATTATTTAAGTACACTCCAAATGCAGTGCTTGCTTCAATCATTATAGCTGCCGTGATAAACCTTGTGGACATTAAAGCAGTTATTCTTCTATGGAAGATTGACAAATTTGATTTTGTTGCTTGCATGGGAGCCTTCTTTGGTGTGATCTTCAAAAGTGTTGAGATTGGCCTTCTTATTGCGGTGGCAATATCTTTTGCTAAAATCCTTTTACAAGTGACAAGGCCAAGGACTGCACTACTTGGAAAGCTTCCAGGGACTAACGTTTACAGGAATGTCCAGCAATATCCTAATGCCACTCAGATTCCTGGCATGGTGATTATCAGGGTTGACTCTGCAATCTACTTCTCAAACTCCAACTATATAAAGGATAGAATTTTGAAATGGCTGACTGATGAAGAGGTGCAAAGGACAGCAAGTGAATTTCCAGGAATACAGTATCTCATTGTTGAATTATCACCTGTTACTGATATTGACACTAGTGGCATCCATGCCCTTGAAGATTTATTTAAAAGCCTTCAGAAAAGAGAAGTCCAGCTTCTGTTGGCAAACCCGGGGCCAATAGTAACGGAGAAGCTACATGCATCCAAATTATCAGATGTGATTGGGGAAAGTAAAATATTTCTCTCAGTGGGTGATGCTGTTGCAACTTTTGGTCCAAAGGGTGGAATATGA 1971 0.4094 MSQVFSDDVVAKTMEEIGSAASSRRHGDTLPHIHKVGTPPKQTLFQEIKHSVIETFFHDDPLGKFKDKSGSRKFILGVQSLFPIFEWAQGYSFKKFKGDLIAGLTIASLCIPQDIAYAKLANLEPQYGLYTSFVAPLVYAFMGSSRDIAIGPVAVVSLLLGTMLSDEISNTKSHEYLRLAFTATFFAGVTQMVLGVFRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGLLGIQKFTKKTDIVSVMRSVWGSVHHGWNWQTIVIGIAFLAFLLVAKYIAKRNKKLFWVAAIAPMTSVILSTFFVYITRADKKGVAIVKHIKKGVNPASAHEIYFSGNYLGAGVKIGVIAGMIALTEAVAIGRTFAAMKDYAIDGNKEMVAMGTMNIIGSLTSCYVATGSFSRSAVNYMAGCSTAVSNIVMSIVVLLTLLVITPLFKYTPNAVLASIIIAAVINLVDIKAVILLWKIDKFDFVACMGAFFGVIFKSVEIGLLIAVAISFAKILLQVTRPRTALLGKLPGTNVYRNVQQYPNATQIPGMVIIRVDSAIYFSNSNYIKDRILKWLTDEEVQRTASEFPGIQYLIVELSPVTDIDTSGIHALEDLFKSLQKREVQLLLANPGPIVTEKLHASKLSDVIGESKIFLSVGDAVATFGPKGGI. 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05348 656 Gene3D STAS domain 507 651 IPR036513 -
Seca5g05348 656 Pfam Sulfate permease family 96 475 IPR011547 GO:0016020
Seca5g05348 656 Pfam STAS domain 528 646 IPR002645 -
Seca5g05348 656 ProSitePatterns SLC26A transporters signature. 125 146 IPR018045 GO:0008271|GO:0008272
Seca5g05348 656 NCBIfam sulfate permease 83 646 IPR001902 GO:0016020|GO:0055085
Seca5g05348 656 PANTHER SULFATE TRANSPORTER 43 648 IPR001902 GO:0016020|GO:0055085
Seca5g05348 656 ProSiteProfiles STAS domain profile. 527 650 IPR002645 -
Seca5g05348 656 SUPERFAMILY SpoIIaa-like 529 651 IPR036513 -
Seca5g05348 656 FunFam Sulfate transporter 31 507 653 - -
Seca5g05348 656 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05348 Seca-Chr5 110371239 110375385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05348 22 653 Inorganic Solute Cotransporters AT1G22150 73.934 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05348 K17470 - gmx:100784124 1053.12