Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05347 ATGGATGTTTTATCCTTAAGCTCAAGCCTTAGCATTTCCAAACCAATTTCTTTGCTTTCAGTTTCACACTCAAATAAACAGAAAAGCCCATCATCATCTCGTATGCAGTTTTCTGTTTCATGCAGAGCCACAAAGCTTCCGGGTCATGAAAACTACTACAAGATACTGTCTTTGAGTCCCAATAGTGCAACCATGGATGACATAAAGAGAGCGTATAGATCAATGGCTCTTCGGTACCATCCTGATGTGTGCCACGAATGCCATGATCGTTTGAAGAAAGAGGAATCGACGAGGATGTTTGTGAAGGTCAATGCAGCTTACAAGACGTTGTCGAATCCCAGGCTTCGAGCAGAGTATGACTATGAATTGGGTTTGAGAATGAGAAGCAAAATGGGTGTTGGTGAAAAGAGGTGGGAGGAGCAAGTGGTTGAGTTGAAGAGAAGGTCTCAAAGACGTATGGCCCAAAAGGGAGGGACATGGGGCAGTACAATGAGGGCCCAAAACACAAAAGATAACAACTAG 522 0.4368 MDVLSLSSSLSISKPISLLSVSHSNKQKSPSSSRMQFSVSCRATKLPGHENYYKILSLSPNSATMDDIKRAYRSMALRYHPDVCHECHDRLKKEESTRMFVKVNAAYKTLSNPRLRAEYDYELGLRMRSKMGVGEKRWEEQVVELKRRSQRRMAQKGGTWGSTMRAQNTKDNN. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05347 173 SMART dnaj_3 50 115 IPR001623 -
Seca5g05347 173 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 13 171 - -
Seca5g05347 173 Pfam DnaJ domain 51 120 IPR001623 -
Seca5g05347 173 ProSiteProfiles dnaJ domain profile. 51 123 IPR001623 -
Seca5g05347 173 MobiDBLite consensus disorder prediction 155 173 - -
Seca5g05347 173 MobiDBLite consensus disorder prediction 149 173 - -
Seca5g05347 173 SUPERFAMILY Chaperone J-domain 40 123 IPR036869 -
Seca5g05347 173 CDD DnaJ 51 112 IPR001623 -
Seca5g05347 173 PRINTS DnaJ domain signature 54 72 IPR001623 -
Seca5g05347 173 PRINTS DnaJ domain signature 95 115 IPR001623 -
Seca5g05347 173 PRINTS DnaJ domain signature 72 87 IPR001623 -
Seca5g05347 173 Gene3D DnaJ domain 37 154 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05347 Seca-Chr5 110363747 110364268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05347 52 120 C2H2 Transcription Factor Family AT1G74250 37.681 5.72e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05347 - - gmx:100783590 180.644