Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05344 ATGGCAGCTGCAACATCTGGTGCTGTGTTATCTTCCTTCTTATGTGGAGGGAAAAGCAGCCAAGCCCTGCTTGCTACTGCTATTGGAGGCAAAGTTGGTGCTGCTGTTAGTCCTAAAAGAGTTATTGTGGCTGCTGCTGCTGCACCAAAGAAGTCATGGATCCCTGCTGTTAAAGGTGGTGGGAATCTCATCGACCCAGAATGGCTTGATGGATCGCTACCAGGTGACTTTGGTTTTGACCCACTTGGCCTAGGCAAGGACCCAGCATTCCTCAAATGGTACAGAGAAGCTGAGCTCATTCATGGGAGGTGGGCAATGGCTGCAGTTGTAGGCATCTTTGTTGGTCAGGCCTGGAGTGGAGTTCCATGGTATGAGGCTGGAGCTGACCCCAATGCAATTGCACCTTTCTCCTTTGGTTCTCTTCTGGGCACACAGTTGCTTCTCATGGGATGGGTAGAGAGCAAGAGATGGGTGGACTTCTTCAACCCAGATTCACAGTCAGTGGAATGGGCCACTCCATGGTCAAGAACCGCCGAGAACTTTGCCAATGCCACTGGTGATCAAGGCTACCCTGGAGGAAAATTCTTTGATCCACTGGGCCTTGCTGGCACCATCAAGGATGGAGTTTACATTCCAGATAGAGAAAAGCTAGAAAGATTGAAATTGGCTGAGATTAAGCATGCCAGGATTGCTATGTTGGCTATGCTGACTTTCTACTTTGAGGCTGGACAAGGGAAGACACCCCTTGGCGCTCTTGGCTTGTAA 765 0.4993 MAAATSGAVLSSFLCGGKSSQALLATAIGGKVGAAVSPKRVIVAAAAAPKKSWIPAVKGGGNLIDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGVPWYEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGDQGYPGGKFFDPLGLAGTIKDGVYIPDREKLERLKLAEIKHARIAMLAMLTFYFEAGQGKTPLGALGL. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05344 254 Pfam Chlorophyll A-B binding protein 66 242 IPR022796 -
Seca5g05344 254 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 50 252 IPR001344 GO:0009765|GO:0016020
Seca5g05344 254 FunFam Chlorophyll a-b binding protein, chloroplastic 66 253 - -
Seca5g05344 254 SUPERFAMILY Chlorophyll a-b binding protein 61 254 - -
Seca5g05344 254 Gene3D Chlorophyll a/b binding protein domain 66 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05344 Seca-Chr5 110346319 110347947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05344 1 254 Chloroplast and Mitochondria Gene Families AT1G15820 81.008 8.82e-150 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05344 K08917 - gmx:100783223 481.485