Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05341 ATGTTGGAGAAATGTGTCTGTGATTTCATCGAGCAGTTCAGCCCTTCACTTGTAAAATCCCATGCCATAGCTTCCAACACTACTTTGATCACTCTCAATTGCACCATGGGGTTTCCCCTTTTTGTTCTCCAACATATTACTTTTTCTGTCCTTGCTATTCTAAACACACATGTTATAGCTCAAGAAGGTCCTATAATTCACCCTGGAGAGAAAGATGCTCTTTTTGGTCTCAAGGCCACTTTCAACAACCCTTTTCTAAATGATAATTGGACTGGCCTCCCCTGCAATTCCAATGGTTCATCAAGGTGGTTCGGGGTTCAGTGTGCCAATGGTCGTGTCACAGGTATAGTTTTGGAAAGTATGGAGCTGGTTGGAGAAATCAATGAAAATGCATTCTTTGACCTTGAAGAGTTGTCTATGCTGAGCTTCAAGAACAATTCTCTACAGGGAAATGTGATGAATTTCTCTAACAATCACCAAATGAAGTACATTGATTTGTCAGGCAATGTTTTCCATGGGCCAATATCAAAATCCCTCTTGAGTCTTAACCTCTTGGAAACGTTGTTTCTGCAAGATAATAGGCTCATAGGTTCAATACCAGAGTTTAGTCAATCAAGTTTGGAGATGTTTAATGTTTCAAATAACAACCTTGAGGGTCCAATCCCAATAATTCCAACTCTCCTATCAATTGACCCTGCTTCATACTCTGGAAATCCTAGATTATGTGGTCCACCTTCTCCTAATTCCTGTAACACTACTGAATCCAATTCTCCTTTCCCACTAGTACTACCCTTAAATGGCACAGACAACAGTGAAGTCCAAGATAAACCTTCAAATAAAAATAACAGTTCCAACATTTTGTTAATTTTCAATGTGGGTCTTCTGCTTGCGATTATAATGCTACTGATTCTTTACTTTACAACATCCAGAAAGCTCAATAAAATAGTGAGGGGACAGATTACCACAGTTGAAGAAAAAGAGAAAGATGTGGAGATCAGTATTGAAAAGAAGGTAGAGATAGGGGAGGGGACAACAATGATGGCAGTAGAAGAGAGAAAGGAACTCATATTCTTTAATAATAAGCCAAAATTTCAAATGAGTGAACTTCTTAGAGCTTCTGCTGAGGCACTGGGTCATGGAATCATGGGGAATAGTTATAAGGCTATGCTGAATGATGGACCTACCATTGTTGTAAAGCGGCTGAGGGACTTGAAACCACTCACTAAGGAGGAATTTGAAAAGATAGTGCAAATGATTGCTGATCTCAAGCACCCAAATTTGTTGCCTTTGCTTGCTTACTACCATTCCAGAGATGAGAAGCTGATGCTTTATAGATATGCAGAGAATGGAAATCTTTTCTCCCGACTTCATGATGGCAGAGGTGGAAACAGGGTTCCATTCAGTTGGAGCTCAAGATTGTCAGTGGCACGAGGCGTGGCTCGAGCATTGGAGTACCTGCACCTCAACAAAAGGTTTCATAACATTGTTCCTCATGGCAATTTGAGGTCTTCAAATGTACTCTTTGATGAAAACGATACAGTTCTTGTTTCTGACTACAGCCTTGCCTCCTTGATAGCACAACCAATTGCAGCTCAACATATGGTTGTTTATAAATCACCTGAATATGGGTATTCAAGAAAGGTTACAATGCAATCTGATGTTTGGAGCTATGGATCCCTTCTAATAGAACTTCTAACTGGCATAGTATCTGTTTGCTCAGCTCCACAAGGGACTAATGGTGTGGATCTATGCAACTGGGTTCACAGAGCTGTGAGAGAAGAATGGACTGCTGAGATCTTTGACAAAGAAATTTCAACCCAAAAGAGTGCACTTCCTGGTATGCTAAGGTTGCTTCAGATTGCAATGCGTTGCATTGAGAGGTTCCCAGAGAAACGCCCTGAGATGAGAGAGGTGGTGAGAGAAGTGGAGAAAATACATGCCCCCATTATCTCTGAAGATGAGGATGATGTATCTGGGGATAGGTCTCTAACTGATGATTCCTTTTCAACCAGTACTACCTCAGGGATTATTGGAGATGAAAGATAG 2046 0.4081 MLEKCVCDFIEQFSPSLVKSHAIASNTTLITLNCTMGFPLFVLQHITFSVLAILNTHVIAQEGPIIHPGEKDALFGLKATFNNPFLNDNWTGLPCNSNGSSRWFGVQCANGRVTGIVLESMELVGEINENAFFDLEELSMLSFKNNSLQGNVMNFSNNHQMKYIDLSGNVFHGPISKSLLSLNLLETLFLQDNRLIGSIPEFSQSSLEMFNVSNNNLEGPIPIIPTLLSIDPASYSGNPRLCGPPSPNSCNTTESNSPFPLVLPLNGTDNSEVQDKPSNKNNSSNILLIFNVGLLLAIIMLLILYFTTSRKLNKIVRGQITTVEEKEKDVEISIEKKVEIGEGTTMMAVEERKELIFFNNKPKFQMSELLRASAEALGHGIMGNSYKAMLNDGPTIVVKRLRDLKPLTKEEFEKIVQMIADLKHPNLLPLLAYYHSRDEKLMLYRYAENGNLFSRLHDGRGGNRVPFSWSSRLSVARGVARALEYLHLNKRFHNIVPHGNLRSSNVLFDENDTVLVSDYSLASLIAQPIAAQHMVVYKSPEYGYSRKVTMQSDVWSYGSLLIELLTGIVSVCSAPQGTNGVDLCNWVHRAVREEWTAEIFDKEISTQKSALPGMLRLLQIAMRCIERFPEKRPEMREVVREVEKIHAPIISEDEDDVSGDRSLTDDSFSTSTTSGIIGDER. 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05341 681 Gene3D Phosphorylase Kinase; domain 1 339 446 - -
Seca5g05341 681 MobiDBLite consensus disorder prediction 663 681 - -
Seca5g05341 681 ProSiteProfiles Protein kinase domain profile. 371 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05341 681 SUPERFAMILY Protein kinase-like (PK-like) 375 646 IPR011009 -
Seca5g05341 681 MobiDBLite consensus disorder prediction 650 681 - -
Seca5g05341 681 SUPERFAMILY L domain-like 68 245 - -
Seca5g05341 681 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 50 646 IPR046959 -
Seca5g05341 681 SMART serkin_6 371 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05341 681 Gene3D Ribonuclease Inhibitor 66 159 IPR032675 -
Seca5g05341 681 Gene3D Ribonuclease Inhibitor 160 253 IPR032675 -
Seca5g05341 681 Pfam Protein tyrosine and serine/threonine kinase 375 641 IPR001245 GO:0004672|GO:0006468
Seca5g05341 681 Gene3D Transferase(Phosphotransferase) domain 1 447 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05341 Seca-Chr5 110318125 110321271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05341 46 681 Receptor kinase-like Gene Family AT4G31250 32.624 7.61e-100 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca5g05341 PK_Tyr_Ser-Thr 4.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05341 - - pcin:129284917 787.719