Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05337 ATGTCGTCTTCTTCAATTTCAATTCCCATTCCGATTCCAATTGCAAGGGATTCTGTGACTGTGAAGCAGATACAGATACAGATACAGATGACGCTTTTCAAACCTCTGACTCTGAAATTGAACCAGCACAGTCGCCGCCTCAACTATTGCACCTCTATTCGGTGCTCAGCTGCTGCTTCTTCCGCTGGTGGTGGTAGTGGGGACGACGATACTATTGTTCTTCATGTTGGGGGAATGATGTGCGAGGGATGCGCAGATAACGTCAGAAGGATTCTAGAAAGTCGACCACAAGTTTCATCTGCTAGTGTAAACCTAACATCCGAGATAGCAATCGTTTCCCCCGTATCTGAAGAAAAAACTGCACCAAATTGGCAAAAGCGATTGGGGGAGGCACTTGCAGAGCATTTAACTAGTTGTGGTTTCAGTTCTAACCTTCGAGGTATAGTTTCAAGATCGTCAGCATGTTTATTACTATTTCATTTAGTTTTCTTACAGTGTTCATCTGATCAATACTGCAAATGA 522 0.4349 MSSSSISIPIPIPIARDSVTVKQIQIQIQMTLFKPLTLKLNQHSRRLNYCTSIRCSAAASSAGGGSGDDDTIVLHVGGMMCEGCADNVRRILESRPQVSSASVNLTSEIAIVSPVSEEKTAPNWQKRLGEALAEHLTSCGFSSNLRGIVSRSSACLLLFHLVFLQCSSDQYCK. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05337 173 ProSiteProfiles Heavy-metal-associated domain profile. 70 144 IPR006121 GO:0046872
Seca5g05337 173 CDD HMA 73 141 IPR006121 GO:0046872
Seca5g05337 173 Gene3D - 70 149 - -
Seca5g05337 173 ProSitePatterns Heavy-metal-associated domain. 76 105 IPR017969 GO:0046872
Seca5g05337 173 FunFam Copper-transporting ATPase PAA1, chloroplastic 70 145 - -
Seca5g05337 173 Pfam Heavy-metal-associated domain 74 141 IPR006121 GO:0046872
Seca5g05337 173 SUPERFAMILY HMA, heavy metal-associated domain 70 118 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05337 Seca-Chr5 110292907 110296387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05337 70 151 Primary Pumps ATPases AT4G33520 64.634 2.38e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05337 - K17686 gmx:100527143 134.035