Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05336 ATGGCGGAGCGCCCTTCTTCTTACGGATTGGGTCCTCGATTAGATATTCAGCAATTACAATATGAAGCCCAGCATCGGTGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCGGATGTTTCATATCACATCAGAACCTCATATTAGGCCACCAAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTTAGAAAAGATGGGCATAATTGGAGAAAGAAAAAGGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTTGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGACGAAGCTATTGGATGCTTGAACCGGATATGATGCACATAGTATTTGTCCACTACCTGGAAGTTAAGGGTAACAAGTCAAATGTTGGAGGAAATGCTGATAGTGATGAGGCCATATCAGATTCCCAAAATGTCAACTCTCCGTCATCTGGCTTTCCCACAAGTTATAGTAGTGTGCCTTCACTGAGTACAGATTCCGTGAGCCCAACTACCAGTTTGACATCTTTACGTGAAGATGCTGATTCTGGTGATCACGGACAGTCATCAATTTCTGGAACAGATTATATCCCACAATTTGATGGGGATAAATTTACGGGAAATGATATCACTTGTATCGATGGTCTGAAAGCACATGGCATGGCATCTTGGGACAGTGTCTTGCAACATACTGCCGAGTTGCACACTGATCCATCTCTTGTGTCATTTCCTTCCATCCCATCTGGTTCAATGGGAAACATGCTTGACCAAGAACATCACGTTTTGGGTGACCTTTTAATAAGCAAAAGTGGCCTCACTGATGGAGCAGGGACCTCTCAGTCTCTACAATCACATTGGCAGCAACAAAAGTTTACTATTTTCATATTGTTATTTGATTTGATGCAGATTCCTTTTGAAGGAAATGCAGGACACATGCCGACCTTAACCCAATCATTGAGTTTGGATTTCGGATCTGATTTTGACACTAGTTTACTAGGGAATGAAGCTCATAATAGAAGTTCTGAAATTTCTCCTGTCCTGTTTAGTTTTCATGGTGAGCCAAAAGACCAGCTTGTGCAGCAAAACTATCCAGAACAGCATGTAGATGAACAATTACAACATGTACTAAAGCCCAATTCTGCAAATAAAGTTCCTGGTGAAGAAACTATCAACTATCCCTTAACTATGAGACGTACATTATTGGATAGTGACGAGAGCCTGAAGAAGGTTGATAGCTTCTCTCGGTGGATTACTAAAGAACTTGCAGAGGTGGATGATTTGAATTTGCAGTCCTCACCTGGTATTTCCTGGAGTACAGATGAATGTGGGCATGTGATAGATGATAGCTCATTAAGCCCATCTCTCTCACAGGACCAACTGTTTAGCATAAATGATTTCTCACCTAAATGGGTTTGTGCTGAGTCAGAAACTGAGGTGTTGATCATTGGATCATTTTTGAAGAGTCAACCAGAGGTGACAATCTGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGATTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCACCTCATAAGGTTGGACGGGTCCCTTTCTATGTAACATGTTCAAATAGGTTAGCTTGTAGTGAAGTGCGGGAATTCGATTACAGAGAGGGCTTTTCTAGAAATGTAGATTTTGCAGATTTTTTCAACAGTTCAACCGATATGCTGCTTCATTTGCGACTGGAGGAGTTTCTTTCTTTAAAGCCAGTGCACCCTTCTAAACAAACCTTTGAGGGTGATATGGAGAAAAGAAAAATAATTTTGAAGCTTATTTCACTGAGAGAGGAAGAGGAATATTCAAGTAAGGAAGAGCTGACTATTGATACAGATATATCACAACACAAGATGAAGGAACATCTGTTTCATACGCAGGTTAAAGAAAAGCTGTACTCATGGCTTCTTCATAAAGTAACTGAGAGTGGCAAAGGGCCAAACGTGTTAGATAAGGATGGGCAGGGTGCGCTACATTTGGTAGCTGTTCTTGGTTATGATTGGGCCATAACCCCAATTTTAATTTCTGGAGTCAATATCAACTTCCGTGATGTGAATGGATGGACAGCTTTACATTGGGCTGCATCCTGTGGCAGAGAGCGGACAGTTGCCGTCCTTGTCTCCATGGGTGCAGATTGTGGGGCATTGACGGACCCATCTCCAGCATTTCCTTCAGGTAGAACAGCTGCAGATCTTGCCTCTAGCAACGGGCACAAAGGAATCTCTGGTTTTCTTGCCGAGTCTTCATTAACTAGCCACCTTGAATCTCTCACAATGGATGATCAACATAAAGGTGGCCGGCAAGAAATTTCAGGAATGAAGGTGGTGCAGACAGTCTCAGAACGAAGTGCAACACCTGTGCTCTATAGTGATATGCCAGATGCCCTCTGTCTTAAGGATTCTCTTACTGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAGTATGAAGATGAGTTTGGATTGTCAGATCAGCGAGCTCTTTCCCTTCTAGCCTCTAAGGCATGCAAATCTGGACAAGGAGATGGTTTAGTCAATGCTGCTGCCATACAAATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTCAAAGAATTGTTAAAATTCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAAACAATCATCTGGTCTGTGGGAATCCTGGAGAAGGTCATATTACGCTGGAGACGCAAGGGTAGTGGTCTACGCGGGTTTCGACAAGATGCCCTTAATAAAGTACCCGTCCAACAAAATGATTCACAGAAAGAGGATGATTATGATTATCTTAAGGAAGGACGGAAACAAAAAGAGGAAAAGATCCAAAAGGCCCTTTCTAGGGTTAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGTTTACTAAATGTTGTTGAAGACTTCCGTCAAACGAAGGCATGTGATATGAGTTTGATCAATTCTGAAGAGACAGTAGATGGTGTGGAGGATTTGATTGATATTGATATGCTTTTAGATGATGATAATTTCATTCCTATAGCATTTGATTGA 3183 0.4172 MAERPSSYGLGPRLDIQQLQYEAQHRWLRPAEICEILRNYRMFHITSEPHIRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLEVKGNKSNVGGNADSDEAISDSQNVNSPSSGFPTSYSSVPSLSTDSVSPTTSLTSLREDADSGDHGQSSISGTDYIPQFDGDKFTGNDITCIDGLKAHGMASWDSVLQHTAELHTDPSLVSFPSIPSGSMGNMLDQEHHVLGDLLISKSGLTDGAGTSQSLQSHWQQQKFTIFILLFDLMQIPFEGNAGHMPTLTQSLSLDFGSDFDTSLLGNEAHNRSSEISPVLFSFHGEPKDQLVQQNYPEQHVDEQLQHVLKPNSANKVPGEETINYPLTMRRTLLDSDESLKKVDSFSRWITKELAEVDDLNLQSSPGISWSTDECGHVIDDSSLSPSLSQDQLFSINDFSPKWVCAESETEVLIIGSFLKSQPEVTICNWSCMFGEVEVPAEILANGILCCQAPPHKVGRVPFYVTCSNRLACSEVREFDYREGFSRNVDFADFFNSSTDMLLHLRLEEFLSLKPVHPSKQTFEGDMEKRKIILKLISLREEEEYSSKEELTIDTDISQHKMKEHLFHTQVKEKLYSWLLHKVTESGKGPNVLDKDGQGALHLVAVLGYDWAITPILISGVNINFRDVNGWTALHWAASCGRERTVAVLVSMGADCGALTDPSPAFPSGRTAADLASSNGHKGISGFLAESSLTSHLESLTMDDQHKGGRQEISGMKVVQTVSERSATPVLYSDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQYEDEFGLSDQRALSLLASKACKSGQGDGLVNAAAIQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKTIIWSVGILEKVILRWRRKGSGLRGFRQDALNKVPVQQNDSQKEDDYDYLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKACDMSLINSEETVDGVEDLIDIDMLLDDDNFIPIAFD. 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05336 1060 FunFam Calmodulin-binding transcription activator 2 469 565 - -
Seca5g05336 1060 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1022 - -
Seca5g05336 1060 Pfam IPT/TIG domain 476 554 IPR002909 -
Seca5g05336 1060 SMART iq_5 906 928 IPR000048 GO:0005515
Seca5g05336 1060 SMART iq_5 883 905 IPR000048 GO:0005515
Seca5g05336 1060 Pfam CG-1 domain 22 135 IPR005559 GO:0003677
Seca5g05336 1060 ProSiteProfiles IQ motif profile. 885 913 IPR000048 GO:0005515
Seca5g05336 1060 Pfam Ankyrin repeats (3 copies) 656 737 IPR002110 GO:0005515
Seca5g05336 1060 ProSiteProfiles Ankyrin repeat region circular profile. 709 735 - -
Seca5g05336 1060 MobiDBLite consensus disorder prediction 145 191 - -
Seca5g05336 1060 Pfam IQ calmodulin-binding motif 886 904 IPR000048 GO:0005515
Seca5g05336 1060 Pfam IQ calmodulin-binding motif 909 928 IPR000048 GO:0005515
Seca5g05336 1060 SUPERFAMILY Ankyrin repeat 660 770 IPR036770 -
Seca5g05336 1060 Gene3D Immunoglobulins 469 564 IPR013783 -
Seca5g05336 1060 SMART ANK_2a 748 777 IPR002110 GO:0005515
Seca5g05336 1060 SMART ANK_2a 709 738 IPR002110 GO:0005515
Seca5g05336 1060 MobiDBLite consensus disorder prediction 145 208 - -
Seca5g05336 1060 FunFam Calmodulin-binding transcription activator 2 883 931 - -
Seca5g05336 1060 ProSiteProfiles CG-1 DNA-binding domain profile. 16 142 IPR005559 GO:0003677
Seca5g05336 1060 Gene3D - 603 811 IPR036770 -
Seca5g05336 1060 ProSiteProfiles Ankyrin repeat profile. 709 741 IPR002110 GO:0005515
Seca5g05336 1060 Gene3D - 884 931 - -
Seca5g05336 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 883 934 IPR027417 -
Seca5g05336 1060 ProSiteProfiles IQ motif profile. 907 931 IPR000048 GO:0005515
Seca5g05336 1060 SMART CG_1_2 19 137 IPR005559 GO:0003677
Seca5g05336 1060 SUPERFAMILY E set domains 476 562 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05336 Seca-Chr5 110269041 110278613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05336 1 1041 CAMTA Transcription Factor Family AT5G64220 52.870 0.0 1054
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Seca5g05336 CG-1 4.9e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05336 K21596 - gmx:100818124 1659.04