Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05335 ATGATAGACGGAAAGGGTGAGGTGGGGCTGAGCTATATGGATAGTCTCTGTTGCTTCAACTCTGCCAATCAGGTTGGTGGAGGACGTTCTTCATGTAGCTCTGGCAAGGGAAAGAGCCATCAGTGCCCAGTTAAGTATGGCTTTAGCCTAGTTAAAGGGAGAGCAAACCACCCAATGGAGGACTATCACGTAGCAAAAATTACCCAGTTCAGAGGGCATGAGTTAGGACTTTTTGCTATATATGATGGACACTTGGGAGACAGTGTGCCGGCCTATTTACAAAAGCATCTCTTTTCTAATATCTTGAAGGAAGAGGACTTCTGGACTGATCCGAACAGTTCCATCATTAAAGCTTATGAGACAACAGATCAGGCCATTCTTTCTCACAGTGCTGATTTGGGGCGAGGAGGATCGACTGCAGTGACTGCCATTCTTATAAATAATCAGAAGTTATGGGTAGCAAATGTTGGAGATTCGCGAGCAGTTCTATCAAGGAAAGGGGTGGCCATACAGATGACTATTGATCATGAGCCCAATACTGAAAGGGGCATCATTGAGAACAAAGGCGGCTTTGTCTCAAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGGGCATTTGGAGACAAAAACCTCAAATCACACTTGAGATCTGATCCTGACGTACAACATGAAGAGATTGACCCAGATACTGAGCTTTTGATACTTGCTAGTGATGGTCTATGGAAGGTAATGGCAAACCAAGAAGCAGTTGATATTGCAAGAAAGATTAAAGATCCACAAAAGGCAGCCAAACAACTAGTTGCAGAGGCATTGAACAGAGAGAGTAAGGATGATATTTCCTGCATTGTAGTTCGTTTCAAGGGATGA 885 0.4429 MIDGKGEVGLSYMDSLCCFNSANQVGGGRSSCSSGKGKSHQCPVKYGFSLVKGRANHPMEDYHVAKITQFRGHELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFWTDPNSSIIKAYETTDQAILSHSADLGRGGSTAVTAILINNQKLWVANVGDSRAVLSRKGVAIQMTIDHEPNTERGIIENKGGFVSNMPGDVARVNGQLAVSRAFGDKNLKSHLRSDPDVQHEEIDPDTELLILASDGLWKVMANQEAVDIARKIKDPQKAAKQLVAEALNRESKDDISCIVVRFKG. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05335 294 CDD PP2Cc 44 292 IPR001932 -
Seca5g05335 294 PANTHER PROTEIN PHOSPHATASE 38 292 IPR015655 GO:0004722|GO:0006470
Seca5g05335 294 SMART PP2C_4 41 290 IPR001932 -
Seca5g05335 294 SUPERFAMILY PP2C-like 40 293 IPR036457 -
Seca5g05335 294 Gene3D - 29 294 IPR036457 -
Seca5g05335 294 ProSiteProfiles PPM-type phosphatase domain profile. 45 292 IPR001932 -
Seca5g05335 294 SMART PP2C_SIG_2 56 292 IPR001932 -
Seca5g05335 294 Pfam Protein phosphatase 2C 54 285 IPR001932 -
Seca5g05335 294 FunFam Probable protein phosphatase 2C 39 36 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05335 Seca-Chr5 110262235 110266987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05335 13 293 PP2C-type Phosphatase Gene Family AT1G22280 70.383 6.59e-147 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05335 K17506 - gmx:100787659 504.597