Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05326 ATGGGGAGCGAGAAGAAGCATGAAGATTCAGCGGTGAAGATGGAGTGGTTGTCTTGCATTGACTCAACAACTCTCTCACACTCAGAGCTCCTTTCCCTTTCTCTCTCCTCTCTCCCCGCCTTCGACCTAACCTCCACCCGCGACCTCGTTACTCCCAAAATCGACCCCTCCCTCTTCAACGAGAGCACTGGCTCCCACCGCCAGACTTACTCCCGACCCCGCCGCCGACGCCGCGTCGCCGCCCTCCTTCCCACCCCTCCCCTCCCCTCCGACCACCGCGTCATCATCGATTACCTCAAGCAATTAATCAGGGAAGACCCCAAGTTCGATCAGGTGGAGCTGCTGCCCCCATCTTCCGTTCCCGAGCCGAGACCAGAACCGAGAACGGAGCCACCGAATGTGGTCAGATTTAACGGGAAGAGGAAGAGAGGGAGGAAGCCCAAAGTGAAGGTTCATTTGGAGGAGTGCTACAGAGGAATGGAGATTGTCAACAAGAATGGCGTCGCCATCGATCTCTCCGCCTTGGCCAATGCCGAGGACCCCTTCGCCGAGGAGCTGGCGAGACGGACGGAGGGGCTGCGCGGTGAAGAGGAGCTGTTAGGGTTTTTGAGGGATTTGGTGGGCCAATGGGGTAGCAGGAGGAAGAAGAGGAGGATTGTTGACGCTGCTGATTTCGGTGATGTATTGCCTCTCGGTTGGAAGCTCCTCCTTGGTTTGAAGAGAAAGGATGGTCGTGCATGGATCTATTGCCGCAGATACATCAGCCCCAGTGGACAGCAGTTTGTGTCTTGCAAAGAAGTCTCTTCCTATTTGCAGTCTCTTTTTGGTCATAGTGAAGCACAATTACAAATCGGTCGTAGGAGTGAAAATATACTGCAGGAGCAGAGAGTGACTGCTGAAAATTCTGCAGGTGTTACCCATGAGGATCAAGATCAACGGCAGATTGTTGCGACTAACTCAGATGTGCCAGGTTTATCTGTTTCTAATGAACGAGTGAAGGAAGTGGCCTTATTGGGGATTGAAAATCTTGCAGATGTGCAAATACATGACCTGTTTGAATGTCATAAATGCAATATGACCTTTGATGAGAAGGATGCATACTTGCAGCACCTGTTGTCCTTTCACCAGAGGACAACCAGACGGTATCGACTCGGTTCTTCTGTTGGAGATGGAGTTATAATTAAAGATGGAAAGTTTGAGTGCCAATTCTGCCATAAGGTGTTTCTGGAAAGGCGTCGCTACAATGGTCATGTTGGGATCCATGTTAGGAATTATGTGAGGAGAGTTGAAGATTCACCAGGTCAAGGAAATGTCCAAAGAACAGACAACTCTCCAGTCAGAGAGGAGATGCCTTCAAGGATCTCTAAGATGGATGCACTAATTGAAATTGCTCAAAATTCTATTATGGAGGATTCTGGCACAGAACCCCATTTTTCAGCTAAACTGAATATGATTCATGCTTCAGAAATTTCTGTTGATGACCTAGATCAAGACATGAACTTTGAGTCTCCAATCAGTGAACAGCAACACAATTCACATCAGCAAGATTGTCAACATTTACTTGTGGATGAAGAACTAGAGGAAATTGATGATAATAACCGAGTTATTGATGCAAAGGTGGTCACTTTTCTAGGTAACATGGGTTTGTTATCTGTAAATAAGCAAAATGTTAATGCATTTGATACTTCTAAGGGAAAAGATGGTCTGGCATTGACTGCTGAGGGGTTTGATCAGTCTGGAATTTATTTGGAAGGAGTTTCTCAAAACCCTTTACTTCCCTTATCTGGCAATCAAATAATACCTGAATCTAAGAAGAGTGAAAATTGTGGTTTAACTAACACTGAGGAGCAATTTAAACTTGATGGAGACAATAGTAATAAGAGTGAGTTGAATATTGGTTTAGAGGGCAGCAAGGATGTGCCTGTTAATGCCAATGTTCAAGAGTCAGTAATGCCAGTTTCGGAAGAAAATGTGGTCCATTCTAGGGTTTCTTACCCTTCTATATCCACAGAACAATCTTTGGATCATTTTCCTGCATTCAGCTCAGATAAGGGAGGAAAACAAATATGCAATGCTGACCATGAACATGATAATGTGAAGGGGTTCCAGGAATTGAGATTGGATGAAATAGGTACTCTCGAGTATGATTTTGCAAGTGCTCAAGATTCTCTTTCTCTGCCTGATGTGCCAACTGAGTTGGCAAACAATACAGTGGTGGAAGGGACATATGCATCCTCAGTTCAGTTTGAATCACAGGAAGTTATGTTAAATGTGGATGGCAGAAATCAGCTTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTAATCATGATGCTGTTAATTCTGAAATGCAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGGCAAAAATCTCTGGTCAAATCAATGTGTTGGATAGTGGATCACCAAATGCTGACCATCTTTAG 2454 0.4531 MGSEKKHEDSAVKMEWLSCIDSTTLSHSELLSLSLSSLPAFDLTSTRDLVTPKIDPSLFNESTGSHRQTYSRPRRRRRVAALLPTPPLPSDHRVIIDYLKQLIREDPKFDQVELLPPSSVPEPRPEPRTEPPNVVRFNGKRKRGRKPKVKVHLEECYRGMEIVNKNGVAIDLSALANAEDPFAEELARRTEGLRGEEELLGFLRDLVGQWGSRRKKRRIVDAADFGDVLPLGWKLLLGLKRKDGRAWIYCRRYISPSGQQFVSCKEVSSYLQSLFGHSEAQLQIGRRSENILQEQRVTAENSAGVTHEDQDQRQIVATNSDVPGLSVSNERVKEVALLGIENLADVQIHDLFECHKCNMTFDEKDAYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRRVEDSPGQGNVQRTDNSPVREEMPSRISKMDALIEIAQNSIMEDSGTEPHFSAKLNMIHASEISVDDLDQDMNFESPISEQQHNSHQQDCQHLLVDEELEEIDDNNRVIDAKVVTFLGNMGLLSVNKQNVNAFDTSKGKDGLALTAEGFDQSGIYLEGVSQNPLLPLSGNQIIPESKKSENCGLTNTEEQFKLDGDNSNKSELNIGLEGSKDVPVNANVQESVMPVSEENVVHSRVSYPSISTEQSLDHFPAFSSDKGGKQICNADHEHDNVKGFQELRLDEIGTLEYDFASAQDSLSLPDVPTELANNTVVEGTYASSVQFESQEVMLNVDGRNQLTTVCVWCGIEFNHDAVNSEMQPDSVGFMCPACKAKISGQINVLDSGSPNADHL. 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05326 817 Gene3D - 209 315 - -
Seca5g05326 817 MobiDBLite consensus disorder prediction 431 450 - -
Seca5g05326 817 SUPERFAMILY DNA-binding domain 225 279 IPR016177 GO:0003677
Seca5g05326 817 MobiDBLite consensus disorder prediction 111 145 - -
Seca5g05326 817 Gene3D Classic Zinc Finger 342 424 - -
Seca5g05326 817 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 5 579 IPR037472 -
Seca5g05326 817 ProSiteProfiles Zinc finger C2H2 type domain profile. 352 380 IPR013087 -
Seca5g05326 817 ProSiteProfiles Zinc finger C2H2 type domain profile. 399 426 IPR013087 -
Seca5g05326 817 ProSitePatterns Zinc finger C2H2 type domain signature. 354 375 IPR013087 -
Seca5g05326 817 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 219 291 IPR001739 GO:0003677
Seca5g05326 817 ProSitePatterns Zinc finger C2H2 type domain signature. 401 421 IPR013087 -
Seca5g05326 817 SMART c2h2final6 399 421 IPR013087 -
Seca5g05326 817 SMART c2h2final6 352 375 IPR013087 -
Seca5g05326 817 MobiDBLite consensus disorder prediction 53 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05326 Seca-Chr5 110196955 110201660 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca5g05326 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05326 - - gmx:100526917 1029.62