Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05319 ATGGAGGCTCCAGCCAACTGGAAGAAGCCAATGGCAAGCTATCTCGTACGCTACCATTCCGATCAGCTCCGCTCCATCACTTCTTCTCCCGATTCCAACCTTCATTTCCCTCTTTACGTCGATTTCGCAGAGTTGATGGAGGACGATCCTCGCATTGCTCGTCTCCTCTTTGCCCAACCCAACACCTACTTGCAAGTGTTCGATGATGCTGCTCTTTGGGCTCATAAAATCATCTTGGAAGATATGGCGGATGACAAGAATGGGATTGAGAAGAAATTCATTCATGTTCGCATTAACGTCAGTGGCTCGCCACTTGAATGCCCTGAGACTTTTCCAAGCATAGGACGTGTTCGAGTGCAGCACCGTGGAATCCTTCTCACTCTCAAAGGGATAGTGATCAGGTCCGGTGCAATCAAGATGCATGAAGGAGAGAGGAAGTACATGTGCCAGAAATGCAAAAACAGCTTCACAGTTTATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGCCCAATTCAGAAGTCTAAACCCTGTGGAGGCACAAAATTCCAGTATGTAGAAAATACTATAGTATGCCATGATTATCAGGAGATAAAAGTCCAAGAAAGTACACAGGTGCTAGGTGTCGGGGCGATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGACCTTGTTGATGTTGTTAAAGCTGGAGATGATGTAATTGTCACTGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTGAAGGATGTGCGATGTGACCTTGATCCTGTATTAATAGCCAACAATGTAAGGAGAATTAATGAACTGAAGTCAGAAATTGATATTTCTGATGATATTGTTATGAAATTCAAGCAGTTCTGGGTTCACTTCAAAGATGCACCTTTAAAAGGGAGGAACGCTATTCTACGAGGAATTTGCCCACAAATATTTGGTCTTTTCACTGTCAAGCTGGCTGTTGCATTAACACTTATTGGAGGTGTGCAACATGTCGATGCTTCTGGAACAAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAACCGATCTGTTATTACCACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGTGAGTGGATGTTGGAAGCTGGGGCCCTTGTCTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAACAGCAGACAATAAGTGTTGCCAAGGCCGGTCTTGTAACAACACTCAGCACTAGAACAACAGTATTTGGGGCCACAAATCCTAAGGGACAATATGATCCTGATCAACCTCTGTCTGTCAATACGACACTTTCTGGTCCTTTATTAAGCAGGTTTGATATTGTTCTAGTGCTCCTAGATACAAAGAATCCTGAATGGGATGCAGTGGTTTCATCTCATATTCTTTCTGAGGCAGAACCGGATAGAACCAACAATGATGAAGATCTAGCAAATATCTGGCCTCTTTCTACACTCAAGAGGTATATACACTATGTGA 1609 0.4382 MEAPANWKKPMASYLVRYHSDQLRSITSSPDSNLHFPLYVDFAELMEDDPRIARLLFAQPNTYLQVFDDAALWAHKIILEDMADDKNGIEKKFIHVRINVSGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGAIKMHEGERKYMCQKCKNSFTVYPEVEARNSISLPSICPIQKSKPCGGTKFQYVENTIVCHDYQEIKVQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNVRRINELKSEIDISDDIVMKFKQFWVHFKDAPLKGRNAILRGICPQIFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRTNNDEDLANIWPLSTLKRYIHYV 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05319 536 Gene3D - 141 197 - -
Seca5g05319 536 Gene3D - 277 536 IPR027417 -
Seca5g05319 536 Pfam MCM P-loop domain 304 507 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca5g05319 536 ProSiteProfiles MCM family domain profile. 302 505 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca5g05319 536 SMART mcm 110 536 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca5g05319 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 509 IPR027417 -
Seca5g05319 536 Gene3D - 117 245 IPR012340 -
Seca5g05319 536 PRINTS Mini-chromosome maintenance (MCM) protein family signature 343 358 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca5g05319 536 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 442 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca5g05319 536 PRINTS Mini-chromosome maintenance (MCM) protein family signature 479 487 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca5g05319 536 PRINTS Mini-chromosome maintenance (MCM) protein family signature 401 415 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca5g05319 536 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 37 536 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca5g05319 536 SUPERFAMILY Nucleic acid-binding proteins 35 252 IPR012340 -
Seca5g05319 536 Pfam MCM OB domain 117 245 IPR033762 -
Seca5g05319 536 SMART AAA_5 344 493 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05319 Seca-Chr5 110140050 110147949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05319 1 536 Core DNA Replication Machinery Family AT2G14050 74.354 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05319 K10738 - gmx:100776255 977.237