Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05312 ATGGGGCGGCATCACAGAAAGTTGATGTCAGAAATCTGTGAGGTGATCTGTCATGTGAAGGAGCCTGGTTCATGTTCATCAGAGTGCAAAATTTGCCTCAAGATCTGCCTAACTAATCCCCAATACTATCCTTATTATTCTCCTCCACCACCACCACCGCCACAAGTTCCTTCTTTCTACTCAGATGAAGATGAATATCAAGGAAACAGCCACAAAATCTCCACCTATTTGATCCTAGCTCTTGCTCTTCTAGCTGCTGCTTTCTTTGTTGTTTGTTGCCGTGCCATCTATACCAGGCTTGGCTCAAGGAGGAGGGAATCACCAACGGAGCAAACACAAGAGACCCGTGAAGATTTTCTTGATGAAGAACATGGCCCTATGGTGGACCACCCCATTTGGTATATCCGCACCCCTGGTCTCCACCAATCGATTATCAACGCCATAACAGTTTGTAAGTATAAGAAAGGTGAGGGCTTGATTGAAGGAACAGAGTGTGTTGTTTGCTTGAGTGAGTTTCAAGAAGATGAGAATCTCAGACTTTTGCCAAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGATCTCATACCAATTGTCCCATGTGTCGGGCTCCCATTGTTACCAACCCTGCAACCGCAAGGATTCCATCTCTGGAACATACCATTACCAATCTCGTTGATTCAAGTTCTTTGGAACATACCCAGATGGAAATTTTGGAAAGTAGCGGTGGAAACAGTGGAGGATTGGAAAATGGTGATTCTGATTCTGAATTGAGGAATAGGGCAGAGGAAGAAGGCCAATTGGAAGTTGAAGATGGGACTGAAACTGAAGGCTCAGCTGCAGAGGTGGTAAATATTAGGCCTAGGAGATCTGTTTCTCTTGATTCTTCTTCGGTTGCAAATATCAATCTTGCTCTTGCAACTTTTGTATCAATGGAATCTAGTGGGAATTCAAATAGAGTGCTGGGGGGTGTCAATGTCATTGAACCTAGTGTTTCAAAGAGGGTTACTGGAAACGAGAATTTGGCTACTACATCTTCAAAAGGTAGCTCTTCTTTCAGGTTAACAAGATATCTGCAGGGTGTTCCTAGCCCAATGAAGAGGTCAAATTCCTACAATGGGAAGTACCTTCTGTCCTCCTGGTATAGCAGCCGCAGTCAGAAGAAGCAAAATGCTATTCTGAGAAGCTTTTAA 1206 0.4353 MGRHHRKLMSEICEVICHVKEPGSCSSECKICLKICLTNPQYYPYYSPPPPPPPQVPSFYSDEDEYQGNSHKISTYLILALALLAAAFFVVCCRAIYTRLGSRRRESPTEQTQETREDFLDEEHGPMVDHPIWYIRTPGLHQSIINAITVCKYKKGEGLIEGTECVVCLSEFQEDENLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVTNPATARIPSLEHTITNLVDSSSLEHTQMEILESSGGNSGGLENGDSDSELRNRAEEEGQLEVEDGTETEGSAAEVVNIRPRRSVSLDSSSVANINLALATFVSMESSGNSNRVLGGVNVIEPSVSKRVTGNENLATTSSKGSSSFRLTRYLQGVPSPMKRSNSYNGKYLLSSWYSSRSQKKQNAILRSF. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05312 401 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
Seca5g05312 401 SMART ring_2 165 206 IPR001841 -
Seca5g05312 401 SUPERFAMILY RING/U-box 158 217 - -
Seca5g05312 401 MobiDBLite consensus disorder prediction 244 284 - -
Seca5g05312 401 Pfam Ring finger domain 164 207 IPR001841 -
Seca5g05312 401 FunFam RING-H2 finger protein ATL54 140 213 - -
Seca5g05312 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 214 IPR013083 -
Seca5g05312 401 CDD RING-H2_EL5-like 164 207 - -
Seca5g05312 401 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 67 215 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05312 Seca-Chr5 110086728 110087933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05312 73 214 C3H Transcription Factor Family AT1G72220 52.703 1.29e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05312 - - gmx:100804758 462.996