Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05294 ATGGAGGGTGGCAACAGAGCCGAAGCAGAGCGGTGGCTCTACACCGCCAACAAACTTCTCAGCGCACGTGACCTTCACGGGGCCCGCTCCTTCGCCATCCGAGCCCGAGAATCCGACCCGAGTTTCGACGCCACTGACCTCCTCCTCGCAGTCATCGACACCCTCCTTGCCGGTGAGGCCCGGATCAGGGACCACCTCGACTGCTACGCCATCCTCCAAGTCATCCGTTACACACAGAACATTGAGTACATCGCCGCTCAGTATCACCGTCTCGCACTCCTCCTTGACCCTCACCGCAACCCCTTTGCCTTTGCCGCTCACGCCTTCACCCTCGTCCATGATGCTTGGTCCCTTCTCTCCAACCCCAACAAGAAAGCTCTTTACGATAACCAACTCAGATTGCTCACTCAACCACCCCCTCCTCAACCTCCACCTCCACCTCCTCCTCCTCCTGCTCCTGCTCCTGCTCCTCCTCCTACTATTCATCACAACCAACACAGGAAAAACCCTAGGTCCAAGGATGCTCCCAGGGTAGTTGCTGAGGAAGAAGAGAACAGGTTGCCGAGTCATGACAATGTCGCTGAGCCGACTCGGCCGAGTGAGACTGAGGAGCGGAGTTTCTGGACCGCGTGTCCCTACTGTTACGTCATGTACGAGTACCCTTCGGTGTACGAGGAGTGTACTCTTCGGTGCCAGAATTGTCGGAGGGGTTTTCATGCGGTGGCGGTACGGTCGCCGCCGCAGATGACTGGGGATGGTGGTTCGTTTTGCAGCTGGGGGTTTATCCCATTAGGGTTTTCTGGGAATTTTAAGGATATTAGTGGGTCTTCTTCCAAGTGGAACCCTTTTGCTCCTCTGTTTCCTTGCCCTTTGAAAGGGGGTTCTTCCAATAAAGGCTCTCGGAAGGGGCCTTGGGTTTATTATGATGATGAAGCGGCTGCGGCGTTTGTGGAGCTTTCCGACACGACGGATGACGATTCTGATGACGGCGACTGGAGGGGAGGGCCTAATAGGAAGGGGAGGAAGAGAGGGAGGAGGAAAGGGGCTTTTACTGGTGATGGTGCTTTTAGGCCAGTTGGGAGGCCTAAGAGAGGGGTTCATAATGGTGCTGATCATGACAATGTGGGTAATGGTGGTGAGGCTGTGGAGGGTGCTTCTGCGCCTGGAGTGACCAATGCTGCTGCTGCAAGGCCCGAATCTAGCAAGAAAGTTGCTTTGGGTGGTTCCAGGAGGAGGGGTGCGGGGAATTTGGGGAAGTTGGATTTGAATGTGGAGTTTAGCAATGAGGTGGAAGAGCCTGCCCATGGAGTGAGTGAAGGCAATGGGCATGGGACTGGACATGCTGAGGATAATATTGAAGGGATTGGGTTTTTTGAAGGGCTTGATGAGTTCCTCAGTAGCTTACCTATTCTAAATGTTGTTGCAGATGATAAGGTTAAGGGCCATTAG 1449 0.5445 MEGGNRAEAERWLYTANKLLSARDLHGARSFAIRARESDPSFDATDLLLAVIDTLLAGEARIRDHLDCYAILQVIRYTQNIEYIAAQYHRLALLLDPHRNPFAFAAHAFTLVHDAWSLLSNPNKKALYDNQLRLLTQPPPPQPPPPPPPPPAPAPAPPPTIHHNQHRKNPRSKDAPRVVAEEEENRLPSHDNVAEPTRPSETEERSFWTACPYCYVMYEYPSVYEECTLRCQNCRRGFHAVAVRSPPQMTGDGGSFCSWGFIPLGFSGNFKDISGSSSKWNPFAPLFPCPLKGGSSNKGSRKGPWVYYDDEAAAAFVELSDTTDDDSDDGDWRGGPNRKGRKRGRRKGAFTGDGAFRPVGRPKRGVHNGADHDNVGNGGEAVEGASAPGVTNAAAARPESSKKVALGGSRRRGAGNLGKLDLNVEFSNEVEEPAHGVSEGNGHGTGHAEDNIEGIGFFEGLDEFLSSLPILNVVADDKVKGH. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05294 482 MobiDBLite consensus disorder prediction 134 201 - -
Seca5g05294 482 Gene3D DnaJ domain 64 133 IPR036869 -
Seca5g05294 482 SUPERFAMILY Chaperone J-domain 61 133 IPR036869 -
Seca5g05294 482 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Seca5g05294 482 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 376 - -
Seca5g05294 482 MobiDBLite consensus disorder prediction 171 201 - -
Seca5g05294 482 CDD DnaJ 67 121 IPR001623 -
Seca5g05294 482 Pfam DnaJ domain 67 129 IPR001623 -
Seca5g05294 482 MobiDBLite consensus disorder prediction 136 160 - -
Seca5g05294 482 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Seca5g05294 482 SMART dnaj_3 66 124 IPR001623 -
Seca5g05294 482 MobiDBLite consensus disorder prediction 321 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05294 Seca-Chr5 109979805 109981253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05294 8 481 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 41.057 1.52e-98 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05294 - - lja:Lj6g3v2193500.1 613.609