Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05293 ATGATGAAAGCGAAGATGGAAATAAAGAAAATAGACAACATAGGAGCTAGGCAGGTAACATTTTCAAAGAGGAAGAAAGGGCTTTTTAAGAAGGCTCAGGAGCTTTCAACTCTTTGTGATGCTGAGATTGCTCTCACAGTCTTTTCTTCTGCTGGCAAGCTCTTCGAATACGCTACCTCAAGTGTGCAGCAGGTAGTTGAAAGGTACAATATGCATCCAAGCATTGACAGATTACAACACCCATCTACAGAGCTGCAGCCTGACAGTGATACCTATAACTACTTCATGATGAGCAAGGATGTGGCAGATAGGACTTGTGAACTGAGGAAATTGAATGGGGAAGAGCTGCAAGGATTAAAACCTCATGAACTACAGAAACTAGAGAAACTACTAAAAAAAGGTTTGGCCCGTGTTTCAAAAGCAAAGGATGAAATAATTGTAAAGGATATCACAGCGCTGAAGAAAAAGAAAGTTGAACTTGTGCAAGACAACCGACGACTGAAACAGAAACAAAGTCTTGCAAACGATCCAGGGCAGTCTTCCAAGTTAATCATGATTTGCAGCCCATCAAATCTTGCTGAAGATTCTGATAATTTTGATGCTTCTCTCTGCTTGGGGCTGCCTTTGTTCAAGTGA 636 0.4119 MMKAKMEIKKIDNIGARQVTFSKRKKGLFKKAQELSTLCDAEIALTVFSSAGKLFEYATSSVQQVVERYNMHPSIDRLQHPSTELQPDSDTYNYFMMSKDVADRTCELRKLNGEELQGLKPHELQKLEKLLKKGLARVSKAKDEIIVKDITALKKKKVELVQDNRRLKQKQSLANDPGQSSKLIMICSPSNLAEDSDNFDASLCLGLPLFK. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05293 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca5g05293 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca5g05293 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Seca5g05293 211 CDD MADS_MEF2_like 5 69 IPR033896 GO:0000977|GO:0045944
Seca5g05293 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca5g05293 211 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Seca5g05293 211 Pfam K-box region 94 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca5g05293 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca5g05293 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca5g05293 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca5g05293 211 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca5g05293 211 Coils Coil 124 144 - -
Seca5g05293 211 Coils Coil 150 170 - -
Seca5g05293 211 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05293 Seca-Chr5 109961424 109965534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05293 1 208 MADS-box Gene Family AT2G22540 43.277 7.77e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca5g05293 K-box 5.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05293 - - ahf:112786765 209.92