Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05292 ATGGATTTGATGATTCATAGGGAAATGAAAATGACGAGAAAGAAGACTGAGATAAAGAAGATCGAAAACATAAACGCGAGGCAGGTGACATTCTGTAAGAGGAGGGGAGGTCTTTTTAAGAAGGCTCAGGAGTTGTCTACTCTTTGTGATGCTCAGATTGCTCTCATAATCTTTTCAGCCACCAACAAGCTCTTTCACTATACTACTTCAAGCATGCAAAGTGTAATTGAAAGGCGTAATAGGTATTCAGCGATTCAAAGATTAGACAATCCACCTATTGAGCAGCAGATTTACTCCGTGGACATGCTGCGCAAGGAAGTAGCAGATAGGACTCATGAGCTGAGTCAGTTGAATGGGGAAGAGCTGCAAGGATTGACAATGCTAGAACTGCACAAACTAGAGGAACTACTTCAAAGAGGTTTGTCCACTATTTCAAAAGTAAAGGGAGTCGAACTTACGGAAGAGAACCAAAAATTGAAACAGGTACAGAGCTTTTCACAAGAACAAAGGCAATCATCATATAAGTCCATTACTTGCAGTTCATCTGATCTTCCTCTAGACTCTGACACATCTTTCAAGTTCGGGTTACATAGCATGGATGAAGAGTATGATGTAATAGTCCTGGGAACAGGCCTCAAGGAATGCATTCTTAGTGGTCTTCTCTCAGTTGATGGCCTCAAAGTGTTGCACATGGACAGAAATGACTACTATGGAGGAGAGTCTACATCTCTTAATCTTACACAGCTATGGAAGCGATTTAGGGGAGATGACAAACCGCCAGAGGAGTTGGGCTCAAGCAGAGAGTATAATGTTGATATGATTCCAAAGTTTATGATGGCCAATGGAATTTTTGTCCGTGTTCTCATCCACACAGATGTTACCAAGTATTTAAACTTCAAAGCAGTAGATGGAAGTTTTGTGTATAACAAGGGAAAGATTTATAAAGTTCCAGCATCAGACGTTGAGGCACTGAAATCACCTTTGATGGGACTATTTGAGAAGCGTCGTGCTCGAAAGTTCTTTATTTATGTCCAAGACTATGATGAAAATGATCCAAAATCTCATGAAGGGCTAGATTTGAACCAAGTGACAGCAAGGCAACTGATATCGAAATACGGGTTGGAAGATGATACAATTGACTTTATTGGTCATGCCTTGGCACTTCATCTTCATGATGGTTACTTGGATGAGCCAGCCAAGGACTTTGTAGAGAGAATAAAGGCATTTGCACGTTTGAGTGCAGTGTATGGTGGAACTTACATGCTCAACAAGCCAGAATGCAAGGTAGAGTTTGATGGTGATGGGAGAGCCATTGGCGTGACCTCAGAAGGAGAAACAGCCAAATGCAAGAAAGTTGTGTGTGATCCATCATATCTGCCTGATAAGGTTCGCAATATTGGAAAAGTTGCACGTGCAATATGCATTATGAGCCATCCTATTCCAGACACCAATGATTCTCACTCAGCACAAGTAATTCTGCCACAGAAGCAACTTGGTCGTAAATCAGATATGTATCTGTTCTGCTGCTCTTATTCTCACAATGTAGCAGCAAAAGGAAAATACATTGCTTTTGTTACAACAGAAGCAGAGACTGACCAACCTGAGGTGGAATTGAAACCCGGTATTGACCTTCTTGGACCTGTAGATGAGATCTTCTATGACACATATGACAGATTTGTACCCTCAAATGATCATGAAGTTGATGGTTGTTTCATCTCAGGAAGCTACGATGCTACCACACACTTTGAGACCTCTGTAAAAGATGTGCTTGAGATGTACAGTAAGATCACTGGAAAGACTCTTGATCTTTCGGTGGACCTAAGTGCTGCAAGTGCTGCAGCTGAAGAATGA 1851 0.4149 MDLMIHREMKMTRKKTEIKKIENINARQVTFCKRRGGLFKKAQELSTLCDAQIALIIFSATNKLFHYTTSSMQSVIERRNRYSAIQRLDNPPIEQQIYSVDMLRKEVADRTHELSQLNGEELQGLTMLELHKLEELLQRGLSTISKVKGVELTEENQKLKQVQSFSQEQRQSSYKSITCSSSDLPLDSDTSFKFGLHSMDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLTQLWKRFRGDDKPPEELGSSREYNVDMIPKFMMANGIFVRVLIHTDVTKYLNFKAVDGSFVYNKGKIYKVPASDVEALKSPLMGLFEKRRARKFFIYVQDYDENDPKSHEGLDLNQVTARQLISKYGLEDDTIDFIGHALALHLHDGYLDEPAKDFVERIKAFARLSAVYGGTYMLNKPECKVEFDGDGRAIGVTSEGETAKCKKVVCDPSYLPDKVRNIGKVARAICIMSHPIPDTNDSHSAQVILPQKQLGRKSDMYLFCCSYSHNVAAKGKYIAFVTTEAETDQPEVELKPGIDLLGPVDEIFYDTYDRFVPSNDHEVDGCFISGSYDATTHFETSVKDVLEMYSKITGKTLDLSVDLSAASAAAEE. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05292 616 FunFam Rab GDP dissociation inhibitor 197 266 - -
Seca5g05292 616 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Seca5g05292 616 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 430 552 - -
Seca5g05292 616 PRINTS Rab GDI protein signature 451 465 IPR000806 GO:0005093|GO:0015031
Seca5g05292 616 PRINTS Rab GDI protein signature 494 510 IPR000806 GO:0005093|GO:0015031
Seca5g05292 616 PRINTS Rab GDI protein signature 519 537 IPR000806 GO:0005093|GO:0015031
Seca5g05292 616 PRINTS Rab GDI protein signature 214 226 IPR000806 GO:0005093|GO:0015031
Seca5g05292 616 PRINTS Rab GDI protein signature 552 571 IPR000806 GO:0005093|GO:0015031
Seca5g05292 616 PRINTS Rab GDI protein signature 573 593 IPR000806 GO:0005093|GO:0015031
Seca5g05292 616 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Seca5g05292 616 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Seca5g05292 616 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Seca5g05292 616 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Seca5g05292 616 Pfam GDP dissociation inhibitor 199 407 IPR018203 GO:0005092|GO:0007264
Seca5g05292 616 Gene3D - 197 280 IPR036188 -
Seca5g05292 616 Gene3D - 553 611 IPR036188 -
Seca5g05292 616 FunFam Rab GDP dissociation inhibitor 316 419 - -
Seca5g05292 616 SUPERFAMILY FAD/NAD(P)-binding domain 199 525 IPR036188 -
Seca5g05292 616 CDD MADS_MEF2_like 13 84 IPR033896 GO:0000977|GO:0045944
Seca5g05292 616 PANTHER RAB GDP-DISSOCIATION INHIBITOR 199 408 IPR018203 GO:0005092|GO:0007264
Seca5g05292 616 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 316 419 - -
Seca5g05292 616 SUPERFAMILY FAD/NAD(P)-binding domain 561 604 IPR036188 -
Seca5g05292 616 Gene3D - 23 93 IPR036879 GO:0003677|GO:0046983
Seca5g05292 616 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Seca5g05292 616 PRINTS Rab GDI/REP protein family signature 222 239 IPR018203 GO:0005092|GO:0007264
Seca5g05292 616 PRINTS Rab GDI/REP protein family signature 284 300 IPR018203 GO:0005092|GO:0007264
Seca5g05292 616 PRINTS Rab GDI/REP protein family signature 333 348 IPR018203 GO:0005092|GO:0007264
Seca5g05292 616 PRINTS Rab GDI/REP protein family signature 204 222 IPR018203 GO:0005092|GO:0007264
Seca5g05292 616 PRINTS Rab GDI/REP protein family signature 267 284 IPR018203 GO:0005092|GO:0007264
Seca5g05292 616 ProSitePatterns MADS-box domain signature. 13 67 IPR002100 GO:0003677|GO:0046983
Seca5g05292 616 SUPERFAMILY SRF-like 11 90 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05292 Seca-Chr5 109944146 109956376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05292 11 161 MADS-box Gene Family AT2G22540 50.296 5.13e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca5g05292 GDI 4.9e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05292 K17255 - gmx:100792036 759.599