Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05280 ATGGCAAACGCTCATTTATCAACTCAACGTACTCCGCCGTGTTTAATTGTATTGAATCAGAGGGTTCCAAATCTCATCGGTGGCAAATTTGTCGAGTCAAAATCATTGTCTTTCATTGATGTTATCAACCCTGCAACGCAAGAAGTTGTTTCTCAACTTCCTTTGACTACAGATGAAGAGTTTAAAGCTGCAGTAGCTGCAGCAAAGAAGGCATTTCCAGCATGGCGTAACACTCCAATCACAAAACGCCAACGTGTTATGTTGAAGTTCCAGGAGCTTATACGCAGGGATATGGATAAACTTGCCCTGAATGTGACCACTGAACAAGGAAAGACATTAAAGGATGCACAAGGAGATGTATTCCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACTCTACAGATGGGGGAGTATGCTTCCAATGTATCACGTGGAATTGATACCTTCAGCATTAGAGAACCACTTGGTGTTTGTGCCGGTATTTGTCCGTTCAACTTTCCTGTTATGATTCCCTTGTGGATGTTCCCAATTGCAGTTACCTGTGGCAATACCTTTATTCTAAAACCATCAGAGAAAGATCCAGGTGCTTCTATAATGCTTGCAGAATTGGCAATGGAAGCTGGTTTGCCAGAGGGTGTCTTAAATATAGTTCATGGAACCCATGATGTTGTAAATGCTATTTGTGATCATGAAGACATCAAAGCCATATCTTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATGCAAGAGCAGCAGCTAAAGGGAAACGTGTTCAGTCTAATATGGGGGCCAAGAATCATGCGGTTGTCATGCCTGATGCAAGTGCTGATGATACTATAAATGCTTTAGTTGCTGCGGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTCTCAGCACAGTTGTTTTTGTTGGAGGCTCAAAATTGTGGGAAAGTAAACTTGTGGAGCGTGCCAAATCTCTTAAAGTAAATGCTGGAACTGAACCTGATGCTGACCTTGGTCCAGTCATTAGCAAACAGGTTTGTTTATGGTTTCCTCTAATCCATCTTGTGTATATGTTAGCTATATATGTTTCTGAAATATTCTTACTGACTGCACAGGCAAAGGAGCGAATACACAAATTAATTCAATCTGGGTTTGACAGTGGTGCCAGACTAGTGCTTGATGGAAGAAGTATAGTGGTCCCCAAATATGAATCTGGTAATTTTATTGGTCCAACCATCTTGGCAGATGTCACTGCCGATATGGAATGCTACAAGGAGGAGATTTTTGGCCCAGTTCTTCTTCTCATGGAGGCTGATAGCTTGGAAGAGGCCATAAACATTATCAACGGAAACAAGTATGGAAATGGTGCTACTATATTTACTAAATCCGGTGTGGCTGCAAGAAAATTTCAGACAGAGATCGAGGCTGGGCAGGTGGGCATCAACGTTCCCATTCCTGTTCCTTTACCCTTTTTCTCTTTTACTGGCAACAAGGCATCATTTGCAGGCGATCTCAATTTCTATGGCAAGGCAGGGGTTAACTTTTATACACAGATCAAAACAATAACGCAGCAGTGGAAGGATTCAGCTAGCGCGGAGAAGATTAACTTGGCAATGCCAACCTCTCAAAAATCTTGA 1635 0.4251 MANAHLSTQRTPPCLIVLNQRVPNLIGGKFVESKSLSFIDVINPATQEVVSQLPLTTDEEFKAAVAAAKKAFPAWRNTPITKRQRVMLKFQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYASNVSRGIDTFSIREPLGVCAGICPFNFPVMIPLWMFPIAVTCGNTFILKPSEKDPGASIMLAELAMEAGLPEGVLNIVHGTHDVVNAICDHEDIKAISFVGSNVAGMHIYARAAAKGKRVQSNMGAKNHAVVMPDASADDTINALVAAGFGAAGQRCMALSTVVFVGGSKLWESKLVERAKSLKVNAGTEPDADLGPVISKQVCLWFPLIHLVYMLAIYVSEIFLLTAQAKERIHKLIQSGFDSGARLVLDGRSIVVPKYESGNFIGPTILADVTADMECYKEEIFGPVLLLMEADSLEEAINIINGNKYGNGATIFTKSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTITQQWKDSASAEKINLAMPTSQKS. 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05280 544 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 491 521 IPR016162 GO:0016491
Seca5g05280 544 SUPERFAMILY ALDH-like 38 526 IPR016161 GO:0016491
Seca5g05280 544 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 344 IPR016163 GO:0016620
Seca5g05280 544 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 19 541 IPR010061 GO:0004491
Seca5g05280 544 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 266 IPR016162 GO:0016491
Seca5g05280 544 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 292 303 IPR016160 GO:0016491
Seca5g05280 544 CDD ALDH_F6_MMSDH 22 525 IPR010061 GO:0004491
Seca5g05280 544 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 26 273 - -
Seca5g05280 544 Pfam Aldehyde dehydrogenase family 369 521 IPR015590 GO:0016491
Seca5g05280 544 Pfam Aldehyde dehydrogenase family 30 344 IPR015590 GO:0016491
Seca5g05280 544 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 24 344 IPR010061 GO:0004491
Seca5g05280 544 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 368 490 IPR016163 GO:0016620
Seca5g05280 544 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 363 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05280 Seca-Chr5 109849979 109856155 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05280 21 509 Aldehyde Dehydrogenase Gene Family AT2G14170 78.937 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05280 K00140 - gmx:100783569 892.108