Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05278 ATGCATTGCTCTTCATCACATGCAGTAGTTGAGGTCAATGTAAATTGGCTGGTTGACTATTGTCTTCAGTCCAATATTGGAGCCAAAAATCATGCTGTCATAATGCCTGATGCAAGAGAGGATGCTACTTTGAAAGCTCTGGTTACAGCTGGTTTTGGTGCTGCTGGACAGAAGTGCACAGCACTGAGTGCTGTTGTTTTCGTTGGAAGTTTCAAACAATGGGAAGATAAACTAGTAGAGCATGCCAGAGCACTTAAGGTCAATGCTGGAACAGAACCAGACACAGACCTTGGTCCAGTTATCAACAAACAGGCAAAGGAACACACTTGCAGATTGGTTCAAAAAGGTGTGGAATCTGGTGCAAAACTAGTGCTTGATGGCCGAAACATTGTGGTTCCAGGATATGAACACGGAAACTTCATTGGTCCCACCATCTTATCTGATGTCACAGTTGACATGGAATGCTACAAGGAGGAGATTCTTGGCCCAGTTCTTTTGTGTATGGAGGTTGACAGAATGCAAGAAGCCATAAACATCGTCAACAGCAACAAATATGGTACTGGAGCTTCCATTTTTACAACTTCGAGTGCAGCTGCAAGAAAATTCCAGACTGAGGTTGAAGTTGGACAGGTTGGCATAAATGTCCCCATCTCTGTTTCGTTGCCCTTTTCTTCCTTCATTAGCTCCAGGCCATCTTTTGTTGGTGATTTGAATTTTGATGGCAGAGCTGGAATTCAATTTTACACGCAGATTAAGACTGTTACTAAACAATGGGCAGACTCATTAGACGGAGATGAAACTCCTCTTGAAATGCCATGTGCTTAG 825 0.4315 MHCSSSHAVVEVNVNWLVDYCLQSNIGAKNHAVIMPDAREDATLKALVTAGFGAAGQKCTALSAVVFVGSFKQWEDKLVEHARALKVNAGTEPDTDLGPVINKQAKEHTCRLVQKGVESGAKLVLDGRNIVVPGYEHGNFIGPTILSDVTVDMECYKEEILGPVLLCMEVDRMQEAINIVNSNKYGTGASIFTTSSAAARKFQTEVEVGQVGINVPISVSLPFSSFISSRPSFVGDLNFDGRAGIQFYTQIKTVTKQWADSLDGDETPLEMPCA. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05278 274 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 254 IPR016162 GO:0016491
Seca5g05278 274 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 27 227 - -
Seca5g05278 274 Pfam Aldehyde dehydrogenase family 24 254 IPR015590 GO:0016491
Seca5g05278 274 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 30 223 IPR016163 GO:0016620
Seca5g05278 274 SUPERFAMILY ALDH-like 26 259 IPR016161 GO:0016491
Seca5g05278 274 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 22 272 IPR010061 GO:0004491
Seca5g05278 274 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 52 63 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05278 Seca-Chr5 109842152 109848049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05278 22 242 Aldehyde Dehydrogenase Gene Family AT2G14170 70.136 7.43e-104 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05278 K00140 - cave:132177147 383.645