Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05275 ATGGGCTCAAGAAAAAAACTCACTGACTTCTCTACCCAATTTTCCTTTGAAATTTTCTCAAATCAGACTAGTTTTGGAGATGGCTTGGCATTTTTCCTTGCAGATCCAGAGCTGCCACTTTTAAGGAGAATAAAAGAAGGAGGTGGTCTTGGTTTGGTGGATGGTAATCAAGAATCAAACTCAACTAAACATTCATTTGTAGCAGTAGAGTTTGACACACACACAAATCCATGGGATCCACCAGGCACTCATGTAGGTATAAACTTGAACTCAATGACATCTCACAAAACTGTGCCATGGTTGGTTGATATTAGGCAAATGAAAGTTTATTATTGTAGAATTGAGTACAGTGCCAGTACTCATAATTTGGAAGTTACTTTCACTGGAAACAAAGGTAAGCAGAAAATAGGTTACCTCTCTTACAATGTTGATTTGAGTGATTACCTACCAGAGTGGGTTGTTTTTGGTTTTTCAGCTGCTACAGGAGATAATTTTGAGATGAATACATTGTGGTCATGGTCATTCAATTCAACCTCACCAATCCCAAATCCTAATCCTTCACCACTTCCCACACCTGAGAAAAAGAGCAAAAAAGGACTATTGGTAGGGCTAGGAGTTGGTATAGGCAAGGCTGCATGCTTCCTTATTTTAGGGTTGGTTTGTATTATAATGTGGAAAAGGGCTAAAGGGAAAAAAGAAGATTCATTTTCTGACCTGAAAATGGATGATGAATTCCAAAAAGGCACTGGACCTAAGAGGTTTTGCTATAATCAATTGGTAAGTGCAACAAATAACTTTGCAGAAGCTCAGAAGATTGGACAAGGTGGATTTGGGGGTGTTTATAAAGGCTATTTGAAAGACTTGAACTCCTATGTTGCTATAAAGAGGATATCAAGAGAGTCTAGGCAGGGGATAAAGGAATATGCATCTGAAGTGAAAATCATTAGCCAACTGAGGCATAGGAATTTAGTACAACTAATTGGTTGGTGCCATAGGAATAAAGATCTCCTCCTTATATATGAGTTCATGCAGAATGGTAGCTTAGATTCCCACCTATATCATGGAAAAAGCATCTTGACATGGCAGATGAGATACAACATTGCTATGGACTTGGCTTCAGCACTTTTGTACCTTCATGAAGAATGGGAGCAGTGTGTGCTTCATAGGGACATTAAACCCAGCAACATTATGTTGGACTCCAGTTTCAATGCTAAGCTTGGGGATTTTGGCTTAGCTAGGTTGGTGGATCATGAGAAAGGATCACAAACCACAGTTATAGCAGGGACAAGGGGTTACATAGCCCCTGAATATTTCACTACAGGGAAGGCTAAGAAAGAATCTGATATATACAGTTTTGGAATTGTTTCATTGGAGTTAGCCAGTGGAAGAAAACCAATTGACCTTAATGCCACTGAGGGTCAAATAACCATATTTGAATGGGTTTGGGAGCTTTATAGATTAGGACGGTTCCTTGAAGTAGTGGACAAAAAACTTGGGGAAGCATTTGATAAGGAACAGATGGAACGTTTAGTGGTTGTTGGCCTTTGGTGTGCCAATCCAGATTATTCATTCAGGCCATCTATAAGGCAATTGATTCAAGTGCTTAAACTTGAAGCTCCTTTACCAGTTCTCCCCCAGAAGATACCTGATCCAACTTACCATCCTCCAACAGTACTTAACTTTGAAGCTCCATTGCCCATTCTGCCATCAAATATGCCAAAACCCACCTACACTATTCCCTCATTTACTGAATCTGCACCTTCAAGTTCTTCATCGTCTATGGCAGCATGCCAATTCTGTAAGTGTATTCATCTACTTCCTTATTTGGACTTAACCATCCTAATTTTGTCTTTGATAATCCCTCAGGCTGCTGTGTTAGACTTCACCTTTCAGCAATTTCACAGTAATGAAGATACCTTGAATCTTGTTGGAGATGTTTATCATGACAATGGAACTCTCCAACTCACCCGGTCTAAGAAAGACAGTGCTGGCAGGGTCACATATTCCAAACAACTTCATCTTTGGGACAAGGACTCAAGAAAACTCACTGACTTCACTTCCAAATTTTCCTTCATTATCAATCAACCAAACAAAACCCAATTTGGAGATGGCATCACATTCTTCCTTGCCAGCCCCAGGGACTTTCCACTTCCTGTCCCACCAGATGGAGCTGGTATTGGCCTTGTGGGACGTCAACAAATGCAAGATCCAAATTACACAAATGAGCATCCATTTGTGGCGGTTGAGTTTGACACCTCTCCAAATGATCCATTTGATCCTCCATATGACCATGTAGGTATCAATATCAACACCATGATGAGTCCTTTCACTACAAAATGGTTGAGTATTAAGGATGGGAGAGTACATCATGCCCATATTATCTACAATTCTAGTTCACATAATTTGAGTCTCATCTTTACAGGATATAAGAATAACATCACTGTCAAACAACACTACTTTCATGTAGTCGATTTGAGAGACTTCCTACCGGAGTGGGTTCAATTTGGCTTCTCTTCAGCAACAGGATTTGTTTATGAGATACACACGCTTTGCTCATGGTCTTTCAATACTAGTTTGGACTTGGAAGTGGTCAATAATGGGAGTTTCAAGTCAGACTCAGAGGTGCACAAGAATGAAATTAGCAGGAAAAAGCTGGTGAAAGTGGTAATAGGCCTCAGCACTGTGGCAGGTGTTTCAATTGTTGGTTTGGGGTTGGCTTGCCTTCTGATTTTGAACATGATGACAAGAGGCAAGGAAGATGACTTGGACAATGATTTTGAAAGAGAGACTGGACCTAAGAAGTTTTCCTATAATGAACTTGTTAGAGCAACTAACAACTTTGCAAAGGAACAGAAGCTTGGAGAAGGAGGTTTTGGGGAAGTTTACAAGGGATTTATAAGAGACTTGGATGACTATGTTGCAGTTAAAAAGATATCAAAGGGATCTAGTCAGGGTGTGAAAGAGTATGCCTCTGAAGTTAAGATCATTAGTCAACTGAGGCATATGAATTTGGTGCAGCTCATAGGATGGTGCCACAAGAAAAATGATCTTTTACTCATCTATGAGTTCATGTCAAATGGAAGCCTTGATTCCCATTTGTATGGAGGCAAAAGCCTTTTGACTTGGGCAGCAAGATACAACATTGCTGGAGGCCTAGCCTCAGCATTATTGTACCTACATGAAGAATGGGAACGATGTGTGATTCATAGGGACATAAAATCAAGTAATGTAATGTTGGATTCAAATTTCAATGCTAAGCTTGGAGACTTTGGATTAGCCAGATTGTTGGATCATGGAAAAGGGTCACAAACTACAGTTTTAGCTGGAACAATGGGATATTTGGCTCCTGAAGCTGCCACCAGAGACAAGGCTAGTAGAGGGTCAGATGTATACAGTTTTGGTATTGTTGCTTTGGAGATAGCCTGTGGAAGAAAACCAATTGAAGTAAAAGCTAGAGAAGAACAAGTCCTTATGATGGAATGGGTTTGGAAACTTTATGGGATAGGTAATCTATTAGAAGCAGCTGATCCAAGATTGTGTGGAGAATTTGATGAGCAAGAAATGGAAAGGTTAATGATAGTTGGGCTATGGTGTGCTCACCCAGATCACAATTTGAGGCCTACAATTAGGCAAGCAGTGCATGTACTTAACTCTGAAGCTCCATTGCCCAATCTACCATCAAATATGCCTGAACCCACCTACACTATTCCTTCATTTAATGTACCTGCACCTTCAACCTCTCCATCCTCTAGTGCTAATGCTTCTGGACTTGAACTTACTAAAGCAGAGCCTTCATCCAATAGCTCTTTCACTGGCTCCTCACAGTCCAATACACCTGCTGCATTTCTGCATACATACTAA 3861 0.4038 MGSRKKLTDFSTQFSFEIFSNQTSFGDGLAFFLADPELPLLRRIKEGGGLGLVDGNQESNSTKHSFVAVEFDTHTNPWDPPGTHVGINLNSMTSHKTVPWLVDIRQMKVYYCRIEYSASTHNLEVTFTGNKGKQKIGYLSYNVDLSDYLPEWVVFGFSAATGDNFEMNTLWSWSFNSTSPIPNPNPSPLPTPEKKSKKGLLVGLGVGIGKAACFLILGLVCIIMWKRAKGKKEDSFSDLKMDDEFQKGTGPKRFCYNQLVSATNNFAEAQKIGQGGFGGVYKGYLKDLNSYVAIKRISRESRQGIKEYASEVKIISQLRHRNLVQLIGWCHRNKDLLLIYEFMQNGSLDSHLYHGKSILTWQMRYNIAMDLASALLYLHEEWEQCVLHRDIKPSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTVIAGTRGYIAPEYFTTGKAKKESDIYSFGIVSLELASGRKPIDLNATEGQITIFEWVWELYRLGRFLEVVDKKLGEAFDKEQMERLVVVGLWCANPDYSFRPSIRQLIQVLKLEAPLPVLPQKIPDPTYHPPTVLNFEAPLPILPSNMPKPTYTIPSFTESAPSSSSSSMAACQFCKCIHLLPYLDLTILILSLIIPQAAVLDFTFQQFHSNEDTLNLVGDVYHDNGTLQLTRSKKDSAGRVTYSKQLHLWDKDSRKLTDFTSKFSFIINQPNKTQFGDGITFFLASPRDFPLPVPPDGAGIGLVGRQQMQDPNYTNEHPFVAVEFDTSPNDPFDPPYDHVGININTMMSPFTTKWLSIKDGRVHHAHIIYNSSSHNLSLIFTGYKNNITVKQHYFHVVDLRDFLPEWVQFGFSSATGFVYEIHTLCSWSFNTSLDLEVVNNGSFKSDSEVHKNEISRKKLVKVVIGLSTVAGVSIVGLGLACLLILNMMTRGKEDDLDNDFERETGPKKFSYNELVRATNNFAKEQKLGEGGFGEVYKGFIRDLDDYVAVKKISKGSSQGVKEYASEVKIISQLRHMNLVQLIGWCHKKNDLLLIYEFMSNGSLDSHLYGGKSLLTWAARYNIAGGLASALLYLHEEWERCVIHRDIKSSNVMLDSNFNAKLGDFGLARLLDHGKGSQTTVLAGTMGYLAPEAATRDKASRGSDVYSFGIVALEIACGRKPIEVKAREEQVLMMEWVWKLYGIGNLLEAADPRLCGEFDEQEMERLMIVGLWCAHPDHNLRPTIRQAVHVLNSEAPLPNLPSNMPEPTYTIPSFNVPAPSTSPSSSANASGLELTKAEPSSNSSFTGSSQSNTPAAFLHTY. 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05275 1286 FunFam L-type lectin-domain containing receptor kinase IX.1 932 1023 - -
Seca5g05275 1286 SUPERFAMILY Concanavalin A-like lectins/glucanases 5 192 IPR013320 -
Seca5g05275 1286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
Seca5g05275 1286 FunFam Lectin-domain containing receptor kinase A4.3 1024 1236 - -
Seca5g05275 1286 CDD STKc_IRAK 272 536 - -
Seca5g05275 1286 CDD lectin_legume_LecRK_Arcelin_ConA 626 859 IPR001220 GO:0030246
Seca5g05275 1286 FunFam Lectin-domain containing receptor kinase A4.3 343 555 - -
Seca5g05275 1286 ProSitePatterns Protein kinases ATP-binding region signature. 272 295 IPR017441 GO:0005524
Seca5g05275 1286 ProSitePatterns Legume lectins beta-chain signature. 746 752 IPR019825 -
Seca5g05275 1286 SUPERFAMILY Concanavalin A-like lectins/glucanases 624 860 IPR013320 -
Seca5g05275 1286 SMART serkin_6 947 1222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05275 1286 SMART serkin_6 266 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05275 1286 ProSitePatterns Legume lectins alpha-chain signature. 829 838 IPR000985 -
Seca5g05275 1286 ProSiteProfiles Protein kinase domain profile. 947 1225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05275 1286 ProSitePatterns Legume lectins beta-chain signature. 67 73 IPR019825 -
Seca5g05275 1286 CDD STKc_IRAK 953 1217 - -
Seca5g05275 1286 MobiDBLite consensus disorder prediction 1231 1277 - -
Seca5g05275 1286 Gene3D - 2 183 - -
Seca5g05275 1286 Gene3D Phosphorylase Kinase; domain 1 932 1023 - -
Seca5g05275 1286 Gene3D Phosphorylase Kinase; domain 1 251 342 - -
Seca5g05275 1286 CDD lectin_legume_LecRK_Arcelin_ConA 6 178 IPR001220 GO:0030246
Seca5g05275 1286 ProSitePatterns Protein kinases ATP-binding region signature. 953 977 IPR017441 GO:0005524
Seca5g05275 1286 PANTHER - 649 1226 - -
Seca5g05275 1286 SUPERFAMILY Protein kinase-like (PK-like) 250 556 IPR011009 -
Seca5g05275 1286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1067 1079 IPR008271 GO:0004672|GO:0006468
Seca5g05275 1286 FunFam L-type lectin-domain containing receptor kinase IX.1 251 342 - -
Seca5g05275 1286 MobiDBLite consensus disorder prediction 1224 1277 - -
Seca5g05275 1286 Pfam Protein kinase domain 267 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05275 1286 Pfam Protein kinase domain 948 1214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05275 1286 Gene3D - 624 881 - -
Seca5g05275 1286 Pfam Legume lectin domain 626 858 IPR001220 GO:0030246
Seca5g05275 1286 Pfam Legume lectin domain 4 188 IPR001220 GO:0030246
Seca5g05275 1286 ProSiteProfiles Protein kinase domain profile. 266 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05275 1286 Gene3D Transferase(Phosphotransferase) domain 1 1024 1237 - -
Seca5g05275 1286 Gene3D Transferase(Phosphotransferase) domain 1 343 554 - -
Seca5g05275 1286 SUPERFAMILY Protein kinase-like (PK-like) 930 1246 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05275 Seca-Chr5 109803282 109817433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05275 6 554 Receptor kinase-like Gene Family AT5G10530 48.571 1.93e-166 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca5g05275 Pkinase 5.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05275 - - cam:101491058 1304.66