Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05273 ATGTATATGGCAATATGGCATTCTCTGACCCCTACTTCAATGATTTATTATAAATTACATGAAAGTAAACTGATTGGTAATTGGTTATGGTGGAGTAGAAAAATTATGAGTTCTGCAGGTGTTGGTGAAGATTGTCTAGGATGGGCAGCAAGAGATGCATCTGGAGTTCTGTCACCATACAAATTCAGTCGCAGGACTCTTGGGAATGAAGATGTTTATGTTAAAATTACACACTGTGGTGTTTGTTATGCTGATGTAATTTGGACAAGGAATAAACATGGGGACTCTAAGTATCCTGTTGTGCCTGGACATGAGATTGCTGGGATTGTAACAAAGGTTGGTTCCAATGTCCAACGTTTTAATGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCATGCAGAGATTGTGAGTTTTGTAATGACAGACTAGAGAATCATTGTATCAAGGGAGTCTACACTTTTAATGCTGTTGATTTTGATGGTACAATTACAAAAGGAGGATACTCCAGTTCCATTGTAGTCCATGAAAGGTATTGCTTCATGATACCCAAAAGCTATCCTTTGGCTTCAGCGGCTCCTTTGCTTTGTGCTGGAATTACTGTTTATTCTCCCATGATGCGTCACAAGATGAATCAACCAGGTAAATCTCTAGGAGTTGTTGGTCTTGGTGGCCTCGGTCATATGGCAGTGAAATTTGGAAAGGCATTTGGTTTGAGTGTAACAGTTTTCAGCTCTAGCATATCCAAGAAAGACGAGGCACTGAGCCTGCTTGGTGCAGACAAATTTGTTGTTTCATCTAATCAAGAGGAGATGAGGGCGTTGGCTAATTCATTGGACTTTATAATTGACACAGCATCTGGTGACCACCCATTTGATCCTTACATGTCACTATTGAAGAAATCTGGTGTTCTGGTCCTAGTTGGGTTCCCAAGTGAAGTCAAATTCAGCCCTGCAAGCCTTATTCTAGGAATGAGAACTGTTTCCGGAAGTGTGACAGGTGGTACAAAAGAAATACAGGAGATGGTTGACTTTTGTGCTGCTAACGAGATTCACCCAAATATAGAAGTGATTCCAATCGAGTATGCAACTGAAGCTCTTGAGAGGGTCATAAAAAAGGACGTGAAATATCGCTTTGTTATAGATATTGAAAACTCCCTTAAATAA 1170 0.4034 MYMAIWHSLTPTSMIYYKLHESKLIGNWLWWSRKIMSSAGVGEDCLGWAARDASGVLSPYKFSRRTLGNEDVYVKITHCGVCYADVIWTRNKHGDSKYPVVPGHEIAGIVTKVGSNVQRFNVGDHVGVGTYVNSCRDCEFCNDRLENHCIKGVYTFNAVDFDGTITKGGYSSSIVVHERYCFMIPKSYPLASAAPLLCAGITVYSPMMRHKMNQPGKSLGVVGLGGLGHMAVKFGKAFGLSVTVFSSSISKKDEALSLLGADKFVVSSNQEEMRALANSLDFIIDTASGDHPFDPYMSLLKKSGVLVLVGFPSEVKFSPASLILGMRTVSGSVTGGTKEIQEMVDFCAANEIHPNIEVIPIEYATEALERVIKKDVKYRFVIDIENSLK. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05273 389 SUPERFAMILY GroES-like 51 217 IPR011032 -
Seca5g05273 389 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 219 246 IPR029752 -
Seca5g05273 389 FunFam Cinnamyl alcohol dehydrogenase 199 354 - -
Seca5g05273 389 SMART PKS_ER_names_mod 55 382 IPR020843 GO:0016491
Seca5g05273 389 PANTHER ALDEHYDE REDUCTASE 44 387 IPR047109 GO:0016616
Seca5g05273 389 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 189 352 IPR036291 -
Seca5g05273 389 FunFam probable cinnamyl alcohol dehydrogenase 48 214 - -
Seca5g05273 389 CDD CAD1 47 383 IPR047109 GO:0016616
Seca5g05273 389 Pfam Alcohol dehydrogenase GroES-like domain 70 182 IPR013154 -
Seca5g05273 389 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 103 117 IPR002328 GO:0008270|GO:0016491
Seca5g05273 389 Pfam Zinc-binding dehydrogenase 226 348 IPR013149 -
Seca5g05273 389 Gene3D - 48 384 - -
Seca5g05273 389 FunFam Putative cinnamyl alcohol dehydrogenase 6 355 384 - -
Seca5g05273 389 Gene3D - 199 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05273 Seca-Chr5 109794569 109798125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05273 37 389 Monolignol Biosynthesis Gene Families AT1G72680 74.504 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05273 K00083 - gmx:100807617 629.402