Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05262 ATGGAGAACTATGCTGCATACCCATCGTACCCTGATTCAGGCGACTCATCTCCACGTTCTAGAGAGATCGATTTCGAGAATCCACCACCATGGGACGATCAACAACAACAAAACCAAAACTACAAAGTCAAGTTCATGTGCAGCTATGCTGGCAAGATCCAACCTCGCACCCACGATAACCAGCTCTCTTACGTCGGTGGCGAGACCAAGATCCTCGCCGTTGATCGCAACATCAAGTTCCCCGCCATGCTTTCCAAGCTCTCTTCTCTATGCAACGTGGACGCCTCTGATCTCTCCTTCAAGTACCAGCTCCCTGGCGAGGACCTTGATGCCCTTATATCTGTCACTAACGATGACGACCTTGACCACATGATGCACGAGTACGATCGTCTCTACCGTGCTTCCGCTAGACCCTCCCGCATGCGATTATTTCTCTTCATCGCAGAAACTCTTCCTCCGGGTTCCCCTTCCGGACAACCCGACCCGGTCAAACCGCCCGTTACCAACGACGTCGACTTCCTCTTTGGCCTTGAGAAGCCCAACGTCGTTGTTCCTCCACCTCAGCCACCGCCCGCGGTTGTCAAATTCCATGATCCGGTGCCGGAACCTGTGGCGCCACGTCCTGAGTACCAACCGCGACCCGCTCCGAACGCTGTTGATCGGGTTGTAGGTTCGGATCCGGGAGTGAACCACCCGCTCGACATTCAGAGGCAGTTGCAGCGGCTGCAAATCGCGGAGAACGAGCAAGCTGCGTATCGGAGGAAAAGCGAGGACAATTACCCCGCCGGAGATTATTATGTTCAGAAGATACCGGACAAATACCCGCCGGCATCTAATTTTCCGGCGAGCGGGCCACCGCAGCAGCAGCACCAGACAGGTTATTGGCCTGAAAAGCCTGTTTCCGGCGAGGTTTATCCTCCTGGAGGAGGGGAACCGCCGGTTTATGTAATTCCGGCGCCGGGAACGTTCTATCATGCCCCAGTGGTGCGTCCACCGGCCACTCAAGGGTACTACGCCGTGCAAAGAGTTCCTTCTGATGGTTACCGTGAACAGCCGGTTTACGGCGGCGTACCACCCCCTAAAGCGCCGTTTTCTTCTCCCGTTCCGGTGACCTTTGCACCGGCACAGCCGGTTAAATCTCCCGCGTATACAGAAGGAGTTAGTGTGGTTCGACAAGCTGGGATACCGGATAATACGGCTGCTGCGTACGCACAGGTGGCGTACGATAGTGCCAGTGGGAGACAGGTTTACTATACTGCCCCGGGTGGCGTAGTGCACGCTCCACCGTACCAAGGAGTTGCTCCGCCTGTCACCACTGATATGAGACAAGCTGGGTTGTCGTTGGGTCAGGATGTTAAAGTAATAAGTAAGATTTCTCAAGGTTCAGTGTGA 1392 0.5503 MENYAAYPSYPDSGDSSPRSREIDFENPPPWDDQQQQNQNYKVKFMCSYAGKIQPRTHDNQLSYVGGETKILAVDRNIKFPAMLSKLSSLCNVDASDLSFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPSRMRLFLFIAETLPPGSPSGQPDPVKPPVTNDVDFLFGLEKPNVVVPPPQPPPAVVKFHDPVPEPVAPRPEYQPRPAPNAVDRVVGSDPGVNHPLDIQRQLQRLQIAENEQAAYRRKSEDNYPAGDYYVQKIPDKYPPASNFPASGPPQQQHQTGYWPEKPVSGEVYPPGGGEPPVYVIPAPGTFYHAPVVRPPATQGYYAVQRVPSDGYREQPVYGGVPPPKAPFSSPVPVTFAPAQPVKSPAYTEGVSVVRQAGIPDNTAAAYAQVAYDSASGRQVYYTAPGGVVHAPPYQGVAPPVTTDMRQAGLSLGQDVKVISKISQGSV. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05262 463 MobiDBLite consensus disorder prediction 1 37 - -
Seca5g05262 463 SUPERFAMILY CAD & PB1 domains 58 150 - -
Seca5g05262 463 Gene3D - 63 148 - -
Seca5g05262 463 PANTHER OS05G0427100 PROTEIN-RELATED 10 336 - -
Seca5g05262 463 SMART PB1_new 57 148 IPR000270 GO:0005515
Seca5g05262 463 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 62 148 - -
Seca5g05262 463 Pfam PB1 domain 58 146 IPR000270 GO:0005515
Seca5g05262 463 CDD PB1_UP2 46 146 - -
Seca5g05262 463 Coils Coil 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05262 Seca-Chr5 109625171 109626562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05262 41 146 MAP Kinase Kinase Kinase AT5G57610 49.057 2.61e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05262 - - var:108341806 613.609