Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05252 ATGGATGAGAAAACCGAGAAGAAAAGATCTAAGATTGACAGAAGCAATTTGGAAAGTGGTTTTGAGATGGATCCAAATAAAGGAAAGAAAAAGAAGCACAAGGACAAAAAGAAAAAACATTCAACTGATCAAATGCTCAATTCAAATGAAACCCTTGAAGAAAATTGTACTGGTGAAGTAGCGGACAAACAAACTTGCTCTATTGAAGGGAATATTACATTCATAAGGAATAGGGAAGAAGAGAGACACATTGATAAGAGGAAGAAGAAAAAGGGGAGGAAAGAGATTGAAGTGATGGATAGTAATGTAGGTGATGATAAAGAGGTGCAGTTCTTGGAAGATAACCAACAAATCAAGATGAAGAAAAGAAAGAAAATCAGTGCGGGAAATTCTAATGCACACTCTCATGTTGCTAATGTTGATTGTGAAGGTGAGATGACAGAGAAGAAGAAAAAACTGAGCAACAAAAGTAAAAGGACAGTAAGGGACTATAAAAGCAATGAAGGTGATCATTCTGCTGTCACTGAAGAGAGGCAAGGCAAGAAGATGAAGACAGAGAAGATACTGAGCAAGAAAAACAAAAGAACTGTTGATGAAGAGTATGAGACCAATGGTGGTGATCTATGTTTGGCCAAAAACAATGCAGTTGACCCACCTGTGGCCAAAAGTAATGTTGATCAACATTTGGTCAAAAGCAATAAAGGTGAAGATGATGATCGAGGCAAGAAGAAGAAGAAGAAACCGAGTGTAGAAAGCAAACATGAGTATAATGAGTTCAAAAGCAATGAAGGTCAAGATGATGACCAAGGCAAGAAGAAGAAGAAAAAGAAACTAAGTGAAGGAAGCAAACATAAGGAGTATAACGAGTTCAGAAGCAATGAAGGTGAAGTTAATGACCAAGGCAAAAAGATGAAGAAGCAGAAGAAACTAATTGAAGAAAGCAAACTTAATAAATATAATGAGTTTAGAAGTGATGAAGGTGAAGATGGTGACCAAGGCAAGAAGATGAAGAAGAAACTGAGTAACAAAAGCAGAAGTAAGGAGAACAGTGAGTTTGATAGGAATGAAGATGATCCACCTTTGGCTAGGGTCAAGTCAGGAGATGCTAATGCTTGTTCTATTGTCACTGAAGTTGATGATCAACGCAAGGAGATGAAGAAAGAAAAGACACCCAAGGTAAGTACTGGTGGATCTCCTAACCCTGCACGTGATGGAACATCCAAACCCAAACGAGTAACTTTTTCTGATCATGTAGAGGTTTGTTGTGATGGCTTAGTGCGTGGGAAAAGGTATACACGAGAAGAAGATGAGAAGATCAAAGCAGCTGTCTTTGACTATATAGAGTCTCATGGTTTGGGAGATGAAGGTCTAGATATGGTTCTCCATTGCAAGAAACATCCTGAAGTTAGGGATTGTTGGAAGGAAATTGGAGCAGTCTTTCCTAATAGACCTTACTTAAGTGTGTATTATCGTGCTCATATTTTGTTTGAAAGGGGTGAGAGCCGTAAGTGGACACGTGATGAGCTTGAATTTGTACGGAAGGTCCAGGAACAACATGGGTCTGATTGGAAATCAGTAGCTGAAGCTTTGGATAAAAGCCGAGCTCATATAAAGGATGCATGGCGTAGAATAAAATCAGCCAATCTAAATAGAGGACGATGGACCCAAGAGGAGATTCAAAAGTTATTTGATTTAGTAAACCTGGATCTACGCGCGAGGGCTTCAGAAGGTTTTAGAAAATCTAAACATGGTATGTTGCGAGATAATATTAGTTGGGAAGCAATTGGTAGCAAATTAACCACTAGAACCAGTCCAGTGTGCTGCAAAAAGTGGTATGAGAAATTAGCATCACCTATGGTTTCCAAGGGTGAGTGGTCTGACACTGATGACTACCGCTTGGTAAATGCTTTATATGCTTTGGATGCATGCTGCATGGAGGAGGTAGACTGGGACAATCTGCTTGAGCATAGGTCTGGTGATGTATGCAGAAAACGGTGGAACCAAATGGTCCAACAAATTGGAGAGCATGGAGGCAAGCCATTTGCTGAGCAGGTTGAAATTCTTTCCAAGAGATATTGCCCCCACTTATTGGAAGCGAGAGAGGACTTTGATAATAAACCTGTGGTTTGTTGA 2133 0.3966 MDEKTEKKRSKIDRSNLESGFEMDPNKGKKKKHKDKKKKHSTDQMLNSNETLEENCTGEVADKQTCSIEGNITFIRNREEERHIDKRKKKKGRKEIEVMDSNVGDDKEVQFLEDNQQIKMKKRKKISAGNSNAHSHVANVDCEGEMTEKKKKLSNKSKRTVRDYKSNEGDHSAVTEERQGKKMKTEKILSKKNKRTVDEEYETNGGDLCLAKNNAVDPPVAKSNVDQHLVKSNKGEDDDRGKKKKKKPSVESKHEYNEFKSNEGQDDDQGKKKKKKKLSEGSKHKEYNEFRSNEGEVNDQGKKMKKQKKLIEESKLNKYNEFRSDEGEDGDQGKKMKKKLSNKSRSKENSEFDRNEDDPPLARVKSGDANACSIVTEVDDQRKEMKKEKTPKVSTGGSPNPARDGTSKPKRVTFSDHVEVCCDGLVRGKRYTREEDEKIKAAVFDYIESHGLGDEGLDMVLHCKKHPEVRDCWKEIGAVFPNRPYLSVYYRAHILFERGESRKWTRDELEFVRKVQEQHGSDWKSVAEALDKSRAHIKDAWRRIKSANLNRGRWTQEEIQKLFDLVNLDLRARASEGFRKSKHGMLRDNISWEAIGSKLTTRTSPVCCKKWYEKLASPMVSKGEWSDTDDYRLVNALYALDACCMEEVDWDNLLEHRSGDVCRKRWNQMVQQIGEHGGKPFAEQVEILSKRYCPHLLEAREDFDNKPVVC. 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05252 710 Gene3D - 545 620 - -
Seca5g05252 710 ProSiteProfiles Myb-like domain profile. 503 545 IPR001005 -
Seca5g05252 710 MobiDBLite consensus disorder prediction 229 363 - -
Seca5g05252 710 MobiDBLite consensus disorder prediction 1 54 - -
Seca5g05252 710 MobiDBLite consensus disorder prediction 1 29 - -
Seca5g05252 710 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 502 549 IPR017930 -
Seca5g05252 710 SMART sant 500 547 IPR001005 -
Seca5g05252 710 SMART sant 550 617 IPR001005 -
Seca5g05252 710 SMART sant 427 498 IPR001005 -
Seca5g05252 710 SMART sant 621 672 IPR001005 -
Seca5g05252 710 ProSiteProfiles Myb-like domain profile. 546 615 IPR001005 -
Seca5g05252 710 SUPERFAMILY Homeodomain-like 501 558 IPR009057 -
Seca5g05252 710 CDD SANT 553 615 IPR001005 -
Seca5g05252 710 MobiDBLite consensus disorder prediction 377 391 - -
Seca5g05252 710 MobiDBLite consensus disorder prediction 159 202 - -
Seca5g05252 710 Pfam Myb-like DNA-binding domain 504 562 - -
Seca5g05252 710 ProSiteProfiles Myb-like domain profile. 617 670 IPR001005 -
Seca5g05252 710 PANTHER GB|AAC33480.1 88 709 - -
Seca5g05252 710 MobiDBLite consensus disorder prediction 122 410 - -
Seca5g05252 710 SUPERFAMILY Homeodomain-like 595 672 IPR009057 -
Seca5g05252 710 Gene3D - 505 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05252 Seca-Chr5 109531760 109534017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05252 504 636 MYB Transcription Factor Family AT3G09370 26.667 1.43e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca5g05252 Myb_DNA-bind_6 5.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05252 - - gmx:100785842 719.539