Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05245 ATGGAGATTTCATCAGTCAGGGGGTTACCTGAACAGGGGATAATAGAGGATCCTAACTTTCTCCATCAGTGGCACTTAAGTTCCATTGATACAACTAGCTTAACAGCTGCTGCTTTTGGAGAGGCTTTACAAAAACATTCATTCTCTAATAGCACAAACTTCAACACCAAAACCTCCATGGAAACTTCACTCAATGGAATGGAAAGACCCACAAAACAGCTCAAAAACAACAGCTGGAACCACAACAAAAGCCCTCAGACAACAACAGATACTCAACTTGCTTCTTGCTCAAATCTTCTTTCATTTGTTGATTCGAATTACACTAGTCAATGGGGACTAATGAAGCCAAAGGTAGAGATGGTGTGTCCTAAAATGGATAACACTACTCTTGCAAACATGTTGATCTCTCAAGGAAACTTGGTGAATGAAAACTATGTCTTTAAAACTTCTTGCCAAGAGGCCAAAAAGATTATGAATCATCCTAAACTTTCTCAACCTCAAGACCACGTAATAGCTGAAAGGAAGAGGCGAGAGAAGCTCAGCCAGCGGTTCATTGCTCTATCTGCTCTTGTTCCGGGCCTAAAAAAGATGGACAAAGCTTCTGTTCTTGGAGAGGCTATCAAGTACTTGAAGCAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAACAGGATGAAAACTGTGGAATCTGTGGTAATTGTGAAAAAATCTCAACTATCTAATGACGGTGAAGACTCTTCTTCAGGTACATTTGACGAGACACTGCCTGAAATTGAAGCAAGATTTTGTGAATCAAATGTGCTCATAAGACTGCACTGTCTGAAGGATAAAGGAGTTATAGAGAAAACAATCAGCGAAATTGAGAAACTCCATCTAAAAGTCATCAATAGCAATGCCATGACATTTGGTAGTTTCGCCCTTGATATAACCATTATTGCTCAGATGGATATGGGGTTTAGCATGACAGCAAAGGATCTTGTGAGAAACCTACGTGCAGCTTTTTCATCTTTCATGTGA 1023 0.4018 MEISSVRGLPEQGIIEDPNFLHQWHLSSIDTTSLTAAAFGEALQKHSFSNSTNFNTKTSMETSLNGMERPTKQLKNNSWNHNKSPQTTTDTQLASCSNLLSFVDSNYTSQWGLMKPKVEMVCPKMDNTTLANMLISQGNLVNENYVFKTSCQEAKKIMNHPKLSQPQDHVIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIKYLKQMQEKVSALEEEQNRMKTVESVVIVKKSQLSNDGEDSSSGTFDETLPEIEARFCESNVLIRLHCLKDKGVIEKTISEIEKLHLKVINSNAMTFGSFALDITIIAQMDMGFSMTAKDLVRNLRAAFSSFM. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05245 340 CDD bHLH_AtNAI1_like 167 239 - -
Seca5g05245 340 PANTHER BHLH TRANSCRIPTION FACTOR 39 338 - -
Seca5g05245 340 Coils Coil 203 230 - -
Seca5g05245 340 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Seca5g05245 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 241 IPR036638 GO:0046983
Seca5g05245 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Seca5g05245 340 Gene3D - 164 235 IPR036638 GO:0046983
Seca5g05245 340 SMART finulus 170 219 IPR011598 GO:0046983
Seca5g05245 340 MobiDBLite consensus disorder prediction 63 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05245 Seca-Chr5 109458381 109461720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05245 1 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.921 2.12e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca5g05245 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05245 - - gmx:100798018 538.495