Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g05241 | ATGTTCGCCGGAGGAATTTTCCGTCATGGGTTGTTGCCTATTATTCTCACTGCTCTGTTTTTCCTCTGCCTCGCTACTCCTTCTCAATCAGATGAGCTTCAATCACTGATGAAGTTTAAGTCTTTTATCCAAAGTTCAGATGCAAATGTCTTCAGTTCTTGGACACAAGCAAATTCTCCCTGCCAATTCACTGGGATTGTCTGCAATTCCAATGGTTTTGTTTCAGAAATCAATCTTGCAAGGAAAAGGCTAGTGGGTACCCTTCCTTTTGATTCAATTTGCGAGCTTGAATCACTTGAGAAGATCTCTTTGGAGTCCAACTTCTTGTATGGCAGCATCAGTGAAGGGTTGAGGAATTGCAAAAACTTGCAGTACTTGGATTTGGGTGGGAATCAATTCACTGGGGCAGTGCCTGACTTGTCAACTCTGAACAAGTTGAAGTACTTGAATTTAAATGCTAGTGGAATTTCTGGGGCATTTCCATGGAAATCTTTGGAAAATTTAACTAGTCTCACATTCTTGAGCCTTGGGGATAACCTATTGGAAAAAACTCCTTTCCCTTTGGAGGTTTTAAAGCTTAACAAATTGTATTGGCTTTACCTCTCAAATTGCAGCATCACAGGGAAAATCCCAGCGGGTATTGGAAATCTCACTCAGCTTCAGAATCTTGAGCTTGCTGACAACCAATTGTCTGGTGAGATTCCAGCTGAAATTGGAAAGCTTCAGAGGCTGAGGCAACTTGAGCTATATGATAACTACTTGAGTGGGGAAATCCCAGTTGGATTTGGCAATCTTACTAATCTTGTTAACTTTGATGCTTCTAATAATCAACTTGAAGGTGGTCTTTCTGAGCTAAGGTCCTTGACAAACCTTTCATCCTTGCAGCTTTTTCAGAACCAACTCTCAGGAACAATACCAGAAGAGCTTGGTGATCTTAAAAACCTCACAGACCTTTCTCTTTACAGTAACAAGCTCACTGGTCATCTTCCTCAAAAGCTTGGCTCATGGGTTGGCATGCAATTCATTGATGTTTCAGACAATTTGCTTTCTGGTCCTATTCCACCTGACATGTGCAAGAACAACCAAATCACAGACATAGCACTCTTAAACAACAGCTTCACTGGAAGCATACCAGAAACATATGCAAAGTGCACATCTTTGGCTCGTTTCAGTGTAAATAAGAATTCACTCTCAGGTGTTGTTCCTTCAGGTATATGGGGCTTGCCAAATCTGGAGCTAATTGATCTTAGAATGAATCAGTTTGAAGGTCTAATATCATCTGATATTGGCAAAGCAAAATCTCTTGCGCAACTGTTTTTATCTAACAATAAGTTCTCAGGTGAGTTACCATTGGAAATCTCAGAAGCTTCTTCATTGGTATTAATTCAGCTAAGTTCAAATCAAATTTCTGGTCACATACCAGAAACGATTGGCAAGTTGAAGAAACTAACTAGTCTTACTTTGAATAACAACAATGTTTCTGGTATGATACCAGATTCTATTGGTTCTTGTGTTTCTCTTAATCAAATAAACCTTGCTGGTAACTCTCTTTCTGGGGTAATACCAGCTAGAATTGGGTCTCTTCCAACCCTCAATTCATTGAACTTGTCCTCAAACCAGCTTTCTGGTGAAATCCCATCAAGTTTATCATCCCTGAAACTTAGCATTCTTGATTTATCAAACAACCAGTTGTTTGGTTCCATACCAGAATCACTGGCTATTTCAGCCTTCAAAGATGGGTTCATGGGAAATCCTGGCTTATGTAGCCAGACTTTGAAAAATTTCCAACCTTGTTCAGTGGAATCAGGCAGCTCCAGGAGACTCAGAAACTTTTTACTCCTTTTCATTGCTGGTTTAATAGTACTGTTTGTTTCATCAGCATATTTCATATTCCTGAAACTGAAACAGAACAACTTTGAGAAGCCACTGAAGAGTAATTCTTGGGATGTCAAGCAGTACCATGTGCTGAACTTCAATGAGAGCGAAATCATTGATGGGATCAAGGCTGAGAATTTGATTGGAAAAGGAGGATCAGGGAATGTTTATAAGGTTATGCTTAAAAGTGGGGAAGAATTTGCAGTGAAACACATATGGACTTCAAATCCAAGTGATAAGGGAAATTGCAGGAGCAACTCAGCTATGCCTATGCTAAAAAGGAGTTCCAGGTCATGTGAGTATGATGCAGAAGTGGCCACTCTTAGCTCTATAAGGCATGTGAATGTGGTGAAGCTCTATTGTAGCATCACAAGTGAAGATAGCAGTCTTCTAGTTTATGAGTTCTTGCCAAATGGGAGTTTATGGGACAGGTTACACACCTGCAATAAGACTCAGATGGGGTGGGAGGTTAGGTATGACATTGCAATGGGTGCAGCTAGAGGATTGGAGTACCTGCATCATGGGTGTGATAGACCTGTTATTCACAGGGATGTCAAATCCAGTAACATATTGTTGGATGAGGAATGGAAGCCAAGAATTGCTGATTTTGGGCTTGCCAAGATTGTGCAAGGTGGAGCAGGCAATTGGACTAATGTCATTGCTGGAACACTTGGCTACATGGCTCCTGAATATGCCTACACTTGTAAGGTGACAGAAAAGAGTGACGTTTACAGCTTTGGGGTGGTCCTGATGGAGTTGGTAACAGGGAAGAGGCCTATGGAGCCAGAGTTTGGAGAGAATAAGGACATTGTGTATTGGGTTTGCAGCAATATTAGAAGCAAAGAAGATGCGCTTCAATTAGTGGATTCTACCATTGCGAAGCATTTCAAAGAAGATGCCTTGAAGGTGTTGAGAATTGCAACATTATGCACAGCGAAAATTCCAGCTGCAAGACCATCAATGAGAATGTTGGTTCAAATGTTGGAAGAGGCAGAGCCTTGTGCTTCACCCAAAGTGATTGTGAACATAGATAATTAA | 2913 | 0.4085 | MFAGGIFRHGLLPIILTALFFLCLATPSQSDELQSLMKFKSFIQSSDANVFSSWTQANSPCQFTGIVCNSNGFVSEINLARKRLVGTLPFDSICELESLEKISLESNFLYGSISEGLRNCKNLQYLDLGGNQFTGAVPDLSTLNKLKYLNLNASGISGAFPWKSLENLTSLTFLSLGDNLLEKTPFPLEVLKLNKLYWLYLSNCSITGKIPAGIGNLTQLQNLELADNQLSGEIPAEIGKLQRLRQLELYDNYLSGEIPVGFGNLTNLVNFDASNNQLEGGLSELRSLTNLSSLQLFQNQLSGTIPEELGDLKNLTDLSLYSNKLTGHLPQKLGSWVGMQFIDVSDNLLSGPIPPDMCKNNQITDIALLNNSFTGSIPETYAKCTSLARFSVNKNSLSGVVPSGIWGLPNLELIDLRMNQFEGLISSDIGKAKSLAQLFLSNNKFSGELPLEISEASSLVLIQLSSNQISGHIPETIGKLKKLTSLTLNNNNVSGMIPDSIGSCVSLNQINLAGNSLSGVIPARIGSLPTLNSLNLSSNQLSGEIPSSLSSLKLSILDLSNNQLFGSIPESLAISAFKDGFMGNPGLCSQTLKNFQPCSVESGSSRRLRNFLLLFIAGLIVLFVSSAYFIFLKLKQNNFEKPLKSNSWDVKQYHVLNFNESEIIDGIKAENLIGKGGSGNVYKVMLKSGEEFAVKHIWTSNPSDKGNCRSNSAMPMLKRSSRSCEYDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWDRLHTCNKTQMGWEVRYDIAMGAARGLEYLHHGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKIVQGGAGNWTNVIAGTLGYMAPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPMEPEFGENKDIVYWVCSNIRSKEDALQLVDSTIAKHFKEDALKVLRIATLCTAKIPAARPSMRMLVQMLEEAEPCASPKVIVNIDN. | 971 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g05241 | 970 | FunFam | Receptor-like protein kinase HAIKU2 | 650 | 760 | - | - | |
Seca5g05241 | 970 | CDD | STKc_IRAK | 673 | 955 | - | - | |
Seca5g05241 | 970 | Gene3D | Transferase(Phosphotransferase) domain 1 | 761 | 963 | - | - | |
Seca5g05241 | 970 | Gene3D | Ribonuclease Inhibitor | 29 | 188 | IPR032675 | - | |
Seca5g05241 | 970 | Gene3D | Phosphorylase Kinase; domain 1 | 650 | 760 | - | - | |
Seca5g05241 | 970 | Pfam | Leucine Rich Repeat | 553 | 572 | IPR001611 | GO:0005515 | |
Seca5g05241 | 970 | Pfam | Protein kinase domain | 670 | 951 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca5g05241 | 970 | SMART | LRR_sd22_2 | 217 | 232 | - | - | |
Seca5g05241 | 970 | SMART | LRR_sd22_2 | 168 | 190 | - | - | |
Seca5g05241 | 970 | SMART | LRR_sd22_2 | 312 | 346 | - | - | |
Seca5g05241 | 970 | SMART | LRR_sd22_2 | 265 | 293 | - | - | |
Seca5g05241 | 970 | SMART | LRR_sd22_2 | 96 | 119 | - | - | |
Seca5g05241 | 970 | FunFam | Leucine-rich receptor-like protein kinase family protein | 188 | 284 | - | - | |
Seca5g05241 | 970 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 761 | 968 | - | - | |
Seca5g05241 | 970 | SUPERFAMILY | L domain-like | 74 | 398 | - | - | |
Seca5g05241 | 970 | Pfam | Leucine rich repeat | 458 | 517 | IPR001611 | GO:0005515 | |
Seca5g05241 | 970 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 805 | 817 | IPR008271 | GO:0004672|GO:0006468 | |
Seca5g05241 | 970 | SMART | LRR_typ_2 | 408 | 431 | IPR003591 | - | |
Seca5g05241 | 970 | SMART | LRR_typ_2 | 168 | 193 | IPR003591 | - | |
Seca5g05241 | 970 | SMART | LRR_typ_2 | 528 | 552 | IPR003591 | - | |
Seca5g05241 | 970 | SMART | LRR_typ_2 | 217 | 241 | IPR003591 | - | |
Seca5g05241 | 970 | SMART | LRR_typ_2 | 121 | 143 | IPR003591 | - | |
Seca5g05241 | 970 | SMART | LRR_typ_2 | 553 | 579 | IPR003591 | - | |
Seca5g05241 | 970 | SMART | LRR_typ_2 | 480 | 504 | IPR003591 | - | |
Seca5g05241 | 970 | SMART | LRR_typ_2 | 288 | 311 | IPR003591 | - | |
Seca5g05241 | 970 | SMART | LRR_typ_2 | 96 | 120 | IPR003591 | - | |
Seca5g05241 | 970 | SMART | LRR_typ_2 | 312 | 336 | IPR003591 | - | |
Seca5g05241 | 970 | FunFam | Receptor-like protein kinase HSL1 | 290 | 596 | - | - | |
Seca5g05241 | 970 | FunFam | Probable inactive receptor kinase RLK902 | 29 | 187 | - | - | |
Seca5g05241 | 970 | Gene3D | Ribonuclease Inhibitor | 346 | 599 | IPR032675 | - | |
Seca5g05241 | 970 | ProSitePatterns | Protein kinases ATP-binding region signature. | 673 | 695 | IPR017441 | GO:0005524 | |
Seca5g05241 | 970 | ProSiteProfiles | Leucine-rich repeat profile. | 122 | 144 | IPR001611 | GO:0005515 | |
Seca5g05241 | 970 | SUPERFAMILY | Protein kinase-like (PK-like) | 652 | 954 | IPR011009 | - | |
Seca5g05241 | 970 | SMART | serkin_6 | 667 | 960 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca5g05241 | 970 | Gene3D | Ribonuclease Inhibitor | 189 | 345 | IPR032675 | - | |
Seca5g05241 | 970 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 23 | 953 | - | - | |
Seca5g05241 | 970 | ProSiteProfiles | Protein kinase domain profile. | 667 | 964 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca5g05241 | 970 | SUPERFAMILY | RNI-like | 318 | 587 | - | - | |
Seca5g05241 | 970 | Pfam | Leucine rich repeat N-terminal domain | 30 | 69 | IPR013210 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g05241 | Seca-Chr5 | 109438429 | 109442194 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g05241 | 7 | 967 | Receptor kinase-like Gene Family | AT1G09970 | 57.688 | 0.0 | 1083 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Seca5g05241 | Pkinase | 6e-45 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g05241 | - | - | gmx:100811489 | 1493.4 |