Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05241 ATGTTCGCCGGAGGAATTTTCCGTCATGGGTTGTTGCCTATTATTCTCACTGCTCTGTTTTTCCTCTGCCTCGCTACTCCTTCTCAATCAGATGAGCTTCAATCACTGATGAAGTTTAAGTCTTTTATCCAAAGTTCAGATGCAAATGTCTTCAGTTCTTGGACACAAGCAAATTCTCCCTGCCAATTCACTGGGATTGTCTGCAATTCCAATGGTTTTGTTTCAGAAATCAATCTTGCAAGGAAAAGGCTAGTGGGTACCCTTCCTTTTGATTCAATTTGCGAGCTTGAATCACTTGAGAAGATCTCTTTGGAGTCCAACTTCTTGTATGGCAGCATCAGTGAAGGGTTGAGGAATTGCAAAAACTTGCAGTACTTGGATTTGGGTGGGAATCAATTCACTGGGGCAGTGCCTGACTTGTCAACTCTGAACAAGTTGAAGTACTTGAATTTAAATGCTAGTGGAATTTCTGGGGCATTTCCATGGAAATCTTTGGAAAATTTAACTAGTCTCACATTCTTGAGCCTTGGGGATAACCTATTGGAAAAAACTCCTTTCCCTTTGGAGGTTTTAAAGCTTAACAAATTGTATTGGCTTTACCTCTCAAATTGCAGCATCACAGGGAAAATCCCAGCGGGTATTGGAAATCTCACTCAGCTTCAGAATCTTGAGCTTGCTGACAACCAATTGTCTGGTGAGATTCCAGCTGAAATTGGAAAGCTTCAGAGGCTGAGGCAACTTGAGCTATATGATAACTACTTGAGTGGGGAAATCCCAGTTGGATTTGGCAATCTTACTAATCTTGTTAACTTTGATGCTTCTAATAATCAACTTGAAGGTGGTCTTTCTGAGCTAAGGTCCTTGACAAACCTTTCATCCTTGCAGCTTTTTCAGAACCAACTCTCAGGAACAATACCAGAAGAGCTTGGTGATCTTAAAAACCTCACAGACCTTTCTCTTTACAGTAACAAGCTCACTGGTCATCTTCCTCAAAAGCTTGGCTCATGGGTTGGCATGCAATTCATTGATGTTTCAGACAATTTGCTTTCTGGTCCTATTCCACCTGACATGTGCAAGAACAACCAAATCACAGACATAGCACTCTTAAACAACAGCTTCACTGGAAGCATACCAGAAACATATGCAAAGTGCACATCTTTGGCTCGTTTCAGTGTAAATAAGAATTCACTCTCAGGTGTTGTTCCTTCAGGTATATGGGGCTTGCCAAATCTGGAGCTAATTGATCTTAGAATGAATCAGTTTGAAGGTCTAATATCATCTGATATTGGCAAAGCAAAATCTCTTGCGCAACTGTTTTTATCTAACAATAAGTTCTCAGGTGAGTTACCATTGGAAATCTCAGAAGCTTCTTCATTGGTATTAATTCAGCTAAGTTCAAATCAAATTTCTGGTCACATACCAGAAACGATTGGCAAGTTGAAGAAACTAACTAGTCTTACTTTGAATAACAACAATGTTTCTGGTATGATACCAGATTCTATTGGTTCTTGTGTTTCTCTTAATCAAATAAACCTTGCTGGTAACTCTCTTTCTGGGGTAATACCAGCTAGAATTGGGTCTCTTCCAACCCTCAATTCATTGAACTTGTCCTCAAACCAGCTTTCTGGTGAAATCCCATCAAGTTTATCATCCCTGAAACTTAGCATTCTTGATTTATCAAACAACCAGTTGTTTGGTTCCATACCAGAATCACTGGCTATTTCAGCCTTCAAAGATGGGTTCATGGGAAATCCTGGCTTATGTAGCCAGACTTTGAAAAATTTCCAACCTTGTTCAGTGGAATCAGGCAGCTCCAGGAGACTCAGAAACTTTTTACTCCTTTTCATTGCTGGTTTAATAGTACTGTTTGTTTCATCAGCATATTTCATATTCCTGAAACTGAAACAGAACAACTTTGAGAAGCCACTGAAGAGTAATTCTTGGGATGTCAAGCAGTACCATGTGCTGAACTTCAATGAGAGCGAAATCATTGATGGGATCAAGGCTGAGAATTTGATTGGAAAAGGAGGATCAGGGAATGTTTATAAGGTTATGCTTAAAAGTGGGGAAGAATTTGCAGTGAAACACATATGGACTTCAAATCCAAGTGATAAGGGAAATTGCAGGAGCAACTCAGCTATGCCTATGCTAAAAAGGAGTTCCAGGTCATGTGAGTATGATGCAGAAGTGGCCACTCTTAGCTCTATAAGGCATGTGAATGTGGTGAAGCTCTATTGTAGCATCACAAGTGAAGATAGCAGTCTTCTAGTTTATGAGTTCTTGCCAAATGGGAGTTTATGGGACAGGTTACACACCTGCAATAAGACTCAGATGGGGTGGGAGGTTAGGTATGACATTGCAATGGGTGCAGCTAGAGGATTGGAGTACCTGCATCATGGGTGTGATAGACCTGTTATTCACAGGGATGTCAAATCCAGTAACATATTGTTGGATGAGGAATGGAAGCCAAGAATTGCTGATTTTGGGCTTGCCAAGATTGTGCAAGGTGGAGCAGGCAATTGGACTAATGTCATTGCTGGAACACTTGGCTACATGGCTCCTGAATATGCCTACACTTGTAAGGTGACAGAAAAGAGTGACGTTTACAGCTTTGGGGTGGTCCTGATGGAGTTGGTAACAGGGAAGAGGCCTATGGAGCCAGAGTTTGGAGAGAATAAGGACATTGTGTATTGGGTTTGCAGCAATATTAGAAGCAAAGAAGATGCGCTTCAATTAGTGGATTCTACCATTGCGAAGCATTTCAAAGAAGATGCCTTGAAGGTGTTGAGAATTGCAACATTATGCACAGCGAAAATTCCAGCTGCAAGACCATCAATGAGAATGTTGGTTCAAATGTTGGAAGAGGCAGAGCCTTGTGCTTCACCCAAAGTGATTGTGAACATAGATAATTAA 2913 0.4085 MFAGGIFRHGLLPIILTALFFLCLATPSQSDELQSLMKFKSFIQSSDANVFSSWTQANSPCQFTGIVCNSNGFVSEINLARKRLVGTLPFDSICELESLEKISLESNFLYGSISEGLRNCKNLQYLDLGGNQFTGAVPDLSTLNKLKYLNLNASGISGAFPWKSLENLTSLTFLSLGDNLLEKTPFPLEVLKLNKLYWLYLSNCSITGKIPAGIGNLTQLQNLELADNQLSGEIPAEIGKLQRLRQLELYDNYLSGEIPVGFGNLTNLVNFDASNNQLEGGLSELRSLTNLSSLQLFQNQLSGTIPEELGDLKNLTDLSLYSNKLTGHLPQKLGSWVGMQFIDVSDNLLSGPIPPDMCKNNQITDIALLNNSFTGSIPETYAKCTSLARFSVNKNSLSGVVPSGIWGLPNLELIDLRMNQFEGLISSDIGKAKSLAQLFLSNNKFSGELPLEISEASSLVLIQLSSNQISGHIPETIGKLKKLTSLTLNNNNVSGMIPDSIGSCVSLNQINLAGNSLSGVIPARIGSLPTLNSLNLSSNQLSGEIPSSLSSLKLSILDLSNNQLFGSIPESLAISAFKDGFMGNPGLCSQTLKNFQPCSVESGSSRRLRNFLLLFIAGLIVLFVSSAYFIFLKLKQNNFEKPLKSNSWDVKQYHVLNFNESEIIDGIKAENLIGKGGSGNVYKVMLKSGEEFAVKHIWTSNPSDKGNCRSNSAMPMLKRSSRSCEYDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWDRLHTCNKTQMGWEVRYDIAMGAARGLEYLHHGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKIVQGGAGNWTNVIAGTLGYMAPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPMEPEFGENKDIVYWVCSNIRSKEDALQLVDSTIAKHFKEDALKVLRIATLCTAKIPAARPSMRMLVQMLEEAEPCASPKVIVNIDN. 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05241 970 FunFam Receptor-like protein kinase HAIKU2 650 760 - -
Seca5g05241 970 CDD STKc_IRAK 673 955 - -
Seca5g05241 970 Gene3D Transferase(Phosphotransferase) domain 1 761 963 - -
Seca5g05241 970 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Seca5g05241 970 Gene3D Phosphorylase Kinase; domain 1 650 760 - -
Seca5g05241 970 Pfam Leucine Rich Repeat 553 572 IPR001611 GO:0005515
Seca5g05241 970 Pfam Protein kinase domain 670 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05241 970 SMART LRR_sd22_2 217 232 - -
Seca5g05241 970 SMART LRR_sd22_2 168 190 - -
Seca5g05241 970 SMART LRR_sd22_2 312 346 - -
Seca5g05241 970 SMART LRR_sd22_2 265 293 - -
Seca5g05241 970 SMART LRR_sd22_2 96 119 - -
Seca5g05241 970 FunFam Leucine-rich receptor-like protein kinase family protein 188 284 - -
Seca5g05241 970 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 761 968 - -
Seca5g05241 970 SUPERFAMILY L domain-like 74 398 - -
Seca5g05241 970 Pfam Leucine rich repeat 458 517 IPR001611 GO:0005515
Seca5g05241 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Seca5g05241 970 SMART LRR_typ_2 408 431 IPR003591 -
Seca5g05241 970 SMART LRR_typ_2 168 193 IPR003591 -
Seca5g05241 970 SMART LRR_typ_2 528 552 IPR003591 -
Seca5g05241 970 SMART LRR_typ_2 217 241 IPR003591 -
Seca5g05241 970 SMART LRR_typ_2 121 143 IPR003591 -
Seca5g05241 970 SMART LRR_typ_2 553 579 IPR003591 -
Seca5g05241 970 SMART LRR_typ_2 480 504 IPR003591 -
Seca5g05241 970 SMART LRR_typ_2 288 311 IPR003591 -
Seca5g05241 970 SMART LRR_typ_2 96 120 IPR003591 -
Seca5g05241 970 SMART LRR_typ_2 312 336 IPR003591 -
Seca5g05241 970 FunFam Receptor-like protein kinase HSL1 290 596 - -
Seca5g05241 970 FunFam Probable inactive receptor kinase RLK902 29 187 - -
Seca5g05241 970 Gene3D Ribonuclease Inhibitor 346 599 IPR032675 -
Seca5g05241 970 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Seca5g05241 970 ProSiteProfiles Leucine-rich repeat profile. 122 144 IPR001611 GO:0005515
Seca5g05241 970 SUPERFAMILY Protein kinase-like (PK-like) 652 954 IPR011009 -
Seca5g05241 970 SMART serkin_6 667 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05241 970 Gene3D Ribonuclease Inhibitor 189 345 IPR032675 -
Seca5g05241 970 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 23 953 - -
Seca5g05241 970 ProSiteProfiles Protein kinase domain profile. 667 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05241 970 SUPERFAMILY RNI-like 318 587 - -
Seca5g05241 970 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05241 Seca-Chr5 109438429 109442194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05241 7 967 Receptor kinase-like Gene Family AT1G09970 57.688 0.0 1083
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca5g05241 Pkinase 6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05241 - - gmx:100811489 1493.4