Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05231 ATGCCTACAAAAATGAAGTATACCACAAGAAAATTGAATGTTATCCAGATCTTGTGGGTATTGTTCTGTTTCTTTAAGGCTGGTTATGGTGCTGAAAGTGACATCTCATGCTTGCAAACCATCAAGGATTCGATGGACCAATTCAATCATTTATCAAGCTGGGATTTCAACAGCAACACTGAAGTTTACATATGTAGATTTACTGGTGTTGAATGCTGGAATAATATGGAAGATAGAATAATCAGTCTCTGGCTTTCTAATATGGGGTTGGAGGGTCCTTTTCCTAGTTGCATTGAGAATTTCTCATGGTTGCATACTTTGAACCTCTCACACAACCAACTTTCTGGATATATCCCATCTGATATATCAAGTAAGTTGCCATATCTGACCTCACTTGATCTCTCTAATAACAAATTCTTTGGTGAAATTCCAGAGGGTATTTCCAACTTCCCTTACTTGAATACCCTTAGACTTGATGGCAACCAGTTAACTGGCCAAATCCCTCAAGAACTTGGGTTGCTTCCCCAGATTAAAGTTTTTAGTGTTGCTAACAACTTGTTAACAGGGCCAGTTCCTGTTTTTGTTAGCAATGTTGATGTGAGTTTGAGCTATGCCAATAATAGTGGACTCTGTGGTGGGACACTAGGAAGCTGTGATGAGAGCCTTTTTGATAGACCATTTTGGTATAGTTTTATTATTGGTTTTGTTGCTTCTGCTATTTCTTTCATGTATTATTATGCACCTTGGACAGAATTCAAAAAGAGGAGGAGTAAAGCTATATATCCCTTAAGAAAGAATCAGAACCATCTAAAGGACACTAGACAAGTAGCTGATTTGCTACCACTAGCCTTGCAAGAACAAGGAAGCAAAGAGCTGTCAAGATTGTTGGAGAGATTAATTCCTACAATGAGCTTTATGGAACTATGCAAGGCAACTGAATGCTTTGGCATGGACAACATATTGGGGCTAGGAACAACAGGGATTATGTTCAAGGCCAAGTTACCAAATAACTGTTTTCTTGCAGTTAAGAGACTATATGATGGTGATAAGTACAAGAGGGAGTTCTTGCTTGAAACAATGATTCCAGGGATACACAGGCAAAGAAACATAGCTCCTCTGGTTGGATTCTGCATAGAGAAAAATGAAAGGTTTTTGGTGTATAAGTACATGTCAAATGGAAGACTCTGTGATTGGTTACATTCTGATGAAGGACATCAAACCATGATATTGGAATGGCCTGAAAGGATTCACATTGCACTTGGGCTAGCAAGAGGTTTGTCTTGGCTCCATAAAAAGTGCAAGGTAGCACATCTCAATCTAGATTCAGAGTGTGTCTTGCTGGACAAGAATTTCGAACCAAAAATTTCCAATTTTGGCAATGCAAAATTCGTAAACCAGACAGTTGAAGATCATGTAAGGACGAAATTGTTTTTGATTGATGGAGTTGGGAAGAAGGGCTGTGTTGAGAAGGATGTCTATGATTTTGGTATAATCCTTTTTGAGGTTATAACTGGGAAAAGATTAAGTCCAACGAGTGATTCTTCTGATGGTGTTGATGGCTCTTTGATGAACTACATTAGAAAAAACTTGTTCACTGATCATATTGATTTTTATGATGCCGTTGATAAATCTATCATTGGTAAAGGTTTTGATCATAAAATCCTTCGTCTCCTTGAAGTTGCTTGCGACTGTGTTAAGCCTTCTTTCGAGAAAAGGCCGAAGATGGATGATGTTTACAAAACTATAAGAGCATTGTGGGAGGGTTATAGACCCTGGTTTGATTCTCAAAGGCTAAAGCTATCTAAGGTTTGTCCTGATCAGATAACAAACTGTAACGAAATAGAATGTATTTGTTGA 1857 0.3813 MPTKMKYTTRKLNVIQILWVLFCFFKAGYGAESDISCLQTIKDSMDQFNHLSSWDFNSNTEVYICRFTGVECWNNMEDRIISLWLSNMGLEGPFPSCIENFSWLHTLNLSHNQLSGYIPSDISSKLPYLTSLDLSNNKFFGEIPEGISNFPYLNTLRLDGNQLTGQIPQELGLLPQIKVFSVANNLLTGPVPVFVSNVDVSLSYANNSGLCGGTLGSCDESLFDRPFWYSFIIGFVASAISFMYYYAPWTEFKKRRSKAIYPLRKNQNHLKDTRQVADLLPLALQEQGSKELSRLLERLIPTMSFMELCKATECFGMDNILGLGTTGIMFKAKLPNNCFLAVKRLYDGDKYKREFLLETMIPGIHRQRNIAPLVGFCIEKNERFLVYKYMSNGRLCDWLHSDEGHQTMILEWPERIHIALGLARGLSWLHKKCKVAHLNLDSECVLLDKNFEPKISNFGNAKFVNQTVEDHVRTKLFLIDGVGKKGCVEKDVYDFGIILFEVITGKRLSPTSDSSDGVDGSLMNYIRKNLFTDHIDFYDAVDKSIIGKGFDHKILRLLEVACDCVKPSFEKRPKMDDVYKTIRALWEGYRPWFDSQRLKLSKVCPDQITNCNEIECIC. 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05231 618 Gene3D Phosphorylase Kinase; domain 1 280 389 - -
Seca5g05231 618 Pfam Protein kinase domain 319 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05231 618 SUPERFAMILY L domain-like 35 222 - -
Seca5g05231 618 FunFam Nuclear pore complex protein NUP107 31 200 - -
Seca5g05231 618 Gene3D Transferase(Phosphotransferase) domain 1 390 591 - -
Seca5g05231 618 ProSiteProfiles Protein kinase domain profile. 315 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05231 618 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Seca5g05231 618 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 83 580 - -
Seca5g05231 618 Gene3D Ribonuclease Inhibitor 32 218 IPR032675 -
Seca5g05231 618 SUPERFAMILY Protein kinase-like (PK-like) 295 581 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05231 Seca-Chr5 109377397 109379632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05231 20 596 Receptor kinase-like Gene Family AT3G28450 34.609 1.62e-100 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Seca5g05231 Pkinase 2.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05231 - - gmx:106795644 950.273