Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05224 ATGGGGCAGAAGCACAAGCGCCCTTCTCCTCTCGAAGAACCACCCACCGCTTCATCCTCCGATTCCGAGGATGATCAACAACCTTCATCCCAACAACAAGACGAAGTAGAAGACGACGAAGAAGCTTCCTCCGAAGAGGAAGCCTCATCCGAAGAAGAAGTTCGACCTTCACCTGCTCAGCAACCTGCTTCCAAAAACCCTCCACCCCCTCCCGCTAACTCCCACCCCAAGCCTTCTTCTTCCGAATCCGCCACCGAATCTGATTCAGGCTCCGACACTGACTCTGACCCGCCCCCACCCGCACGCGCACCCCCTGCTGCTAACTCCAAAGTGAAACCCCTCGCATCCAAGCCCATGGACCAGACCCCCAAGCCCAACAAGGCCCAGAACTCCTCTGCTCCCGCTAGATCGGCCACGAAGCGCTCCGCTGAGAACAACGCCCACGTCACTGACCCCAAACGTGCCAAGAAGAAGCCGGCCGATTCTGCCGCTGCCGGTGGTTCCGATGATGAGGTGGAGGAGGACGAGAAGAAGCCCGGCGAGGACAACAGGAAACAGTTTCAGAGACTGTGGAGCGAGGAAGATGAGATCGCAATTCTCAAGGGCATTGCCGAGTTCACTTCGAAAACCGGGAGTGACCCGTTAAAGTACGCTGATGCGTTTTACGATTTCATGAAAAAGTCGCTGCATGCAGATGCTTCAAGCATCCAGCTGAAGGATAAGATTCGGAGGCTGAAGAAGAAGTTCGAGACCAATGCAAAGAAAGGGAAGAACGGAGAGGACCCTACTTTCTCCAAACCCCACGAGAAGAAAACTTTTGAATTGTCCAAAAAGGTTTGGTCCAGTGCAGCCAACGAAGCAGCGGCAGAAAAGGCAGAAAAGGTCAAGTCTAATGGGAGAACTGCCAAGACGCCCAAGAAGGAAGGTGGCAGTAGTAGAAATGCAGCTTCTGCGAAGAAACCGAAAGTCGAAGCGAGAGCAGAACCGGAGCAGCAGCAACCCGTGGGATTGAAGGAATCTGGGAAGATGCACATTGATGGAAAGCCTGAAAAAAGTGTGCTTTTGAGTGAATTGGTTCGTTTTGGAAATGGTGTTAGTACGTGTGGGCTGAATGAGGATGTGATAAAGAAGGGGGTGGAGTTGATGGAAGAATCAAAGAGGGTTGAGTTGGAGGGTAAATGGAAGAAATTGCAAGTTGCCGAATTGGAGCTGTTTGTGAAGCGTACACAGCTGATTGAGGATCAGACTAGGTTGATATTGGAGGCGTTCAAGTCATCAGACCATTAG 1287 0.5206 MGQKHKRPSPLEEPPTASSSDSEDDQQPSSQQQDEVEDDEEASSEEEASSEEEVRPSPAQQPASKNPPPPPANSHPKPSSSESATESDSGSDTDSDPPPPARAPPAANSKVKPLASKPMDQTPKPNKAQNSSAPARSATKRSAENNAHVTDPKRAKKKPADSAAAGGSDDEVEEDEKKPGEDNRKQFQRLWSEEDEIAILKGIAEFTSKTGSDPLKYADAFYDFMKKSLHADASSIQLKDKIRRLKKKFETNAKKGKNGEDPTFSKPHEKKTFELSKKVWSSAANEAAAEKAEKVKSNGRTAKTPKKEGGSSRNAASAKKPKVEARAEPEQQQPVGLKESGKMHIDGKPEKSVLLSELVRFGNGVSTCGLNEDVIKKGVELMEESKRVELEGKWKKLQVAELELFVKRTQLIEDQTRLILEAFKSSDH. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05224 428 PANTHER BNAANNG10740D PROTEIN-RELATED 69 422 IPR007592 GO:0006355
Seca5g05224 428 MobiDBLite consensus disorder prediction 289 307 - -
Seca5g05224 428 MobiDBLite consensus disorder prediction 13 27 - -
Seca5g05224 428 MobiDBLite consensus disorder prediction 1 189 - -
Seca5g05224 428 MobiDBLite consensus disorder prediction 28 48 - -
Seca5g05224 428 MobiDBLite consensus disorder prediction 61 76 - -
Seca5g05224 428 MobiDBLite consensus disorder prediction 249 276 - -
Seca5g05224 428 MobiDBLite consensus disorder prediction 171 189 - -
Seca5g05224 428 MobiDBLite consensus disorder prediction 249 345 - -
Seca5g05224 428 MobiDBLite consensus disorder prediction 77 94 - -
Seca5g05224 428 MobiDBLite consensus disorder prediction 122 145 - -
Seca5g05224 428 MobiDBLite consensus disorder prediction 146 164 - -
Seca5g05224 428 Pfam Protein of unknown function, DUF573 187 281 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05224 Seca-Chr5 109344813 109346099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05224 6 422 GeBP Transcription Factor Family AT1G61730 32.949 3.23e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Seca5g05224 DUF573 4.2e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05224 - - gmx:100791520 345.51