Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05221 ATGCTTGAGGTTTGTTTTTCTCTCAAGAGGACGCTTCAGTGCAAATCAAATCCAAAACAAGTTCATGATCCAAAGACAAGTAGGCACAAGAAAAGTAATCAGAGAACAAAGGGCATTGACATCTCTAATCCCATAAGCCATGAAATTGTTCTTGATAGCTCAAACAATGAAACTTGTCGATGTCCTCAAAGCAGTAGTAGCAGTAAAGATTCGGAAGGTTCTCACAGAACAAGAAGGCCAGCTACACCTTCAAGGATAACCAATCCTATTGATTATAATGAAGCAAATGTTTCCTCTGACACAAAGATGTGGATTGAGATGGACTCTGATGATCCTTCATCATCGATATGTCGTAAATGTGGTGAGAAACTGAAGAATCTTGATGCTGTTGAAGCACACCATATCTCTGAGCATTCAGTCACTGAACTTCAAGAAGATTCATCTAGGCAGATTATAGAAACAATATGTGGAACAAGCTTGGTTAATTCTGAAAACATGTTGGGGCAGATTGATTGTATCTTAAAAGTTCAGAACATGCCAAAAACTCTTTCTTGCTTTGAGGAATACAGAGAAATGGTAAAGATTAAGGCTGACAAACTACAGAAGAAGCACCCGCGTTGCTTGGTTGATGGAAATGAGCTTTTAAGGTTCCATGGCACAGGTATTGCATGCTCTCTTGGCATAAATAGTTCCTATAGCCTATGCACTTTAGACTACTGTGGTGTGTGTCAAATTCTGAGGCATGGCTTCTCCACCAACAAGGAATTTCAAGGTACATTAGGTGTTTACACCACTTCCACAAGTGGAAAAGCCTTTGATTCCATTAGGCCATCTGATTCTGATGAGAGAACATTTGCTAGAAAGTCAGTTATAGTGTGTAGAGTAATAGCTGGGAGAGTTTATTGTCCTCTTGAAGAGAATCAAGAAAAGGTTGATTCAGGGTTTGACTCATTGGCAGAGAAAACAAGTAATCATTCAGATGTTGAGGAACTCTACGTATTAAATCCCAAAGCTCTGCTCCCTTGCTTTGTGGTAATCTACAAACAACAAACAGAGAAAATTAAAAGGTTCAACTCAAGCTTAAGGATAAGTAACTTTTAA 1101 0.3878 MLEVCFSLKRTLQCKSNPKQVHDPKTSRHKKSNQRTKGIDISNPISHEIVLDSSNNETCRCPQSSSSSKDSEGSHRTRRPATPSRITNPIDYNEANVSSDTKMWIEMDSDDPSSSICRKCGEKLKNLDAVEAHHISEHSVTELQEDSSRQIIETICGTSLVNSENMLGQIDCILKVQNMPKTLSCFEEYREMVKIKADKLQKKHPRCLVDGNELLRFHGTGIACSLGINSSYSLCTLDYCGVCQILRHGFSTNKEFQGTLGVYTTSTSGKAFDSIRPSDSDERTFARKSVIVCRVIAGRVYCPLEENQEKVDSGFDSLAEKTSNHSDVEELYVLNPKALLPCFVVIYKQQTEKIKRFNSSLRISNF. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05221 366 Gene3D - 135 352 - -
Seca5g05221 366 MobiDBLite consensus disorder prediction 16 92 - -
Seca5g05221 366 SUPERFAMILY ADP-ribosylation 169 353 - -
Seca5g05221 366 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 7 347 - -
Seca5g05221 366 MobiDBLite consensus disorder prediction 37 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05221 Seca-Chr5 109334440 109336746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05221 107 348 C2H2 Transcription Factor Family AT5G54630 60.400 6.02e-96 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05221 - - gmx:100792577 509.99