Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05218 ATGCGAGGATCTGATTCAGGGAAGTATTCAAAGCAAGCAAAGGACAAGGATGAGGGATTGGATGAAGAAGAAGATGAGGAGCACGGGGAGACCATGTGTGGCGCATGCGGGGAGAACTATGCATCTGATGAGTTTTGGATTTGTTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCTAGGGCTGAGCACATTAAGCAGTACAAGTGTCCATCTTGCAACAATAAGAGAGCACGACCTTGA 261 0.4713 MRGSDSGKYSKQAKDKDEGLDEEEDEEHGETMCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCNNKRARP. 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05218 86 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 81 IPR013083 -
Seca5g05218 86 SMART PHD_3 32 80 IPR001965 -
Seca5g05218 86 CDD PHD_AL_plant 33 82 IPR044104 -
Seca5g05218 86 MobiDBLite consensus disorder prediction 1 27 - -
Seca5g05218 86 SUPERFAMILY FYVE/PHD zinc finger 22 83 IPR011011 -
Seca5g05218 86 ProSiteProfiles Zinc finger PHD-type profile. 30 82 IPR019787 -
Seca5g05218 86 PANTHER CPG BINDING PROTEIN 10 85 IPR045104 GO:0006355|GO:0042393
Seca5g05218 86 Pfam PHD-finger 32 82 IPR019787 -
Seca5g05218 86 ProSitePatterns Zinc finger PHD-type signature. 33 79 IPR019786 -
Seca5g05218 86 FunFam PHD finger alfin-like protein 25 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05218 Seca-Chr5 109316289 109316918 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05218 10 85 Alfin-like Transcription Factor Family AT3G42790 75.000 1.68e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Seca5g05218 PHD 2.7e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05218 K26274 - gmx:100500110 158.688