Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05216 ATGGACAATAATGATGATGAATATGTTGTTCATTTGGACAATGATAACGATCCGAGTTTTCGTTGTAGTGTCAGCGCTGATGATAGTACAAGTGAAGAGGATTATGATTTGGGTGATAATAGTGAGCCGAATAATGTAGATGCAACGGAAGAAGAATATAAAAAGATAATAGACTTGACTGCTGAAGATATATCAAGTATGGAGTTTTGTAGTGAAACTGAAGTTTGTGAGTTTTATACTTTGTATGCAAAATTACATGGATTTGTGATGAGGAAAGATGATGTTGCTCGAGATTATCATGGAAATTTGATTATGCGTCAGTTGGTGTGCAATAGGGAGGGAAGGAGAGATAAAAAACACTTCATGAGGGTAGATAGAAAAAGGGCTCACAGACCAATCACACGAACTAAATGTGAAGCTAGGTTGCGGGTACACTTTGATTATAGATCCTCAAAATGGAAAGTGGTTGCATTTGAGGAGTCTCATAATCATGAGCTTACCCCTCCCAAATACATACACTTAATTTCTGCATACCGTAAGTTGAGTGATGGGGATAAGGCTCAGGCTCAAAGTTTACACTCTTATGGTGTTAGAACCTGTCATATAATGGGATTCATGTTGGCTCAAAAGGGGGGGTACGCTGGCCTTGGTTTTAACAAGAAGGATTTGCAAAACTACTTGGATGAGCAAAAGCGTGGTAGGATAAAAGATGGGGATGCACATGCTGCCTTAAGCTATTTAGTAGGTAAGGCTGACAATAACCGCACTATGTTTTGTAGAGCCACAATTACAAATGATGGTAAATTGAATAACCTTTTTTGGGCTGATGCAACTAGTAGAGCTGATTTTCAGTGTTTTGGAGATGTTCTTGCATTCGATGCAACATACAAGAAGAATAGATACAATAAGCCATTGGTTATTTTCTCTGGCTGCAATCATCACTTGCAGACCATAATATTTAGATGTGCTTTGGTCTCTGATGAAAAGGTGGAGACATATAAGTGGCTTTTAGAAACCTTCTTGGAAGCAATGTCAAACAAATTTCCGAAAGCAGTAGTCACAGATAGTGATGGTTCAATGAGGGAGGCTATAAGACAAGTATTTCCAGATGCAGCCCATAGACTTTGTGCATGGCACTTACACAAGAATGCATGTTAG 1158 0.3869 MDNNDDEYVVHLDNDNDPSFRCSVSADDSTSEEDYDLGDNSEPNNVDATEEEYKKIIDLTAEDISSMEFCSETEVCEFYTLYAKLHGFVMRKDDVARDYHGNLIMRQLVCNREGRRDKKHFMRVDRKRAHRPITRTKCEARLRVHFDYRSSKWKVVAFEESHNHELTPPKYIHLISAYRKLSDGDKAQAQSLHSYGVRTCHIMGFMLAQKGGYAGLGFNKKDLQNYLDEQKRGRIKDGDAHAALSYLVGKADNNRTMFCRATITNDGKLNNLFWADATSRADFQCFGDVLAFDATYKKNRYNKPLVIFSGCNHHLQTIIFRCALVSDEKVETYKWLLETFLEAMSNKFPKAVVTDSDGSMREAIRQVFPDAAHRLCAWHLHKNAC. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05216 385 MobiDBLite consensus disorder prediction 1 47 - -
Seca5g05216 385 Pfam MULE transposase domain 289 383 IPR018289 -
Seca5g05216 385 Pfam FAR1 DNA-binding domain 77 167 IPR004330 -
Seca5g05216 385 PANTHER OS01G0519700 PROTEIN 61 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05216 Seca-Chr5 109304206 109305363 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g05216 MULE 6.3e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05216 - - ccaj:109792835 498.049