Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05211 ATGAATAAAGCAACCATTATTGATGATGCTATCACCTACATCAAGAAGATGCAAGACAAAGTCCAGAGTCTCAGCCAAGAGCTTCACCAAATGGAAGCAACTTCAGAGGAAACAGCAGAAACAAAGATAGATGAAATTGATGCTGCAGAAGATATGAAGAAATGGGGGATACAGGTCGCAGAGATCAGAGTGGCACAAATCAAAGGGAATAAGCTCTGGGTCAAGATCATCATTGAGCAGAAGAGGGGAAGATTCAATAAATTGATGGAGGCCATGAATAATTTTGACATTGAGTTCATAGATATCAATCTTACAACCACTAAAGGGGCATTTCTCATTACAGGCTGCATACAGGGAAACGATGAGGAGGGACTTGCAGTTCATCAAATCAAGAATTTGTTGCAAGACATTATCAATGACACATAG 426 0.3991 MNKATIIDDAITYIKKMQDKVQSLSQELHQMEATSEETAETKIDEIDAAEDMKKWGIQVAEIRVAQIKGNKLWVKIIIEQKRGRFNKLMEAMNNFDIEFIDINLTTTKGAFLITGCIQGNDEEGLAVHQIKNLLQDIINDT. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05211 141 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 136 - -
Seca5g05211 141 Gene3D - 1 38 IPR036638 GO:0046983
Seca5g05211 141 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 34 IPR036638 GO:0046983
Seca5g05211 141 Coils Coil 7 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05211 Seca-Chr5 109259156 109260758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05211 1 138 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 38.356 3.75e-26 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05211 - - gmx:100806159 209.534