Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05204 ATGGCAGAGGAGTTTCAAGCTGGTATTTGTGGTGAAACTTGGTGGAATATTAATCCAACAAGAAGTGTGTTCCCTCTTATGAGCTCATCATCAACCTGTTCCGTGGCAGCTAATGATCATGCAGCCAACTATAGCACTTGGCAAACTGATTTTGTAGATTTGAAGGCAACAAGGTCTTGTGCTGAGGAGATTAATAATATCAATATGGTTTCTGATGGTTCTCTGGGTTTTGTTGATGCTCAGAAGGCACAGCAGAGTGAATCAGTTAGTGGTGGAACTGGTGGTAGCATCTTGATGGATTCCACCTTACAAATTATGGGTTTTGGCCTTTCCTCTTCAAATTCATCCAATTGGAATCAGTCTCTATTTAGTGGAAGGCCAGAGAGCAATTTTCACTCTGTGCTTGAAGAAGAAACAGTTATAGATTCTTCCAATAATTCACAAATCCAAAAGGACTGGAGCCCAAAGAATTTCTCATCTGCAGGTGGAAGCCAAGTTTCCACAATTGATGGTTTCAAACAAATGAACCAAGAATTTTCATTAGATGAGCAGAGTCTGAATTGTGTAACAAGCAGCACTGGTGGATTCCCAAATTCCTATGGTTACCCTTCAACGTTGATATATGAGGCTGATCCTCAACCACAATCACAGAATTCACTTTTCACCAACCCCTCTGCTATGTCCTATTCATCCACTCCAACTGTGTATGGGACATCCTCCAATGAACTGTCACCAACTTGGTCTAAAGTCTCTACTTCCCTTATGAAACCCTCCATGCCAAAACAGCAGCTTAGTGGATTGCACTTTTCCAATAACACTCCTTTTTGGAATGCTTCAGCCGAGGCACTTGATGACATAAGAGCAGGAGTTTTTGCTTCTTCATCCCAGGGGCAATACCAAACACCAAATTTTGAAGAGAAAAAACTCAGTAGCCCAAGTAGTACTCTATTAAGCAAGCAGCTAAAGAGAGAAGAGTCTCCCGATACGGGGAAGAAAAGTTGTTCTGAGCTGCCTGCACTTAAGAGGCCAAGAATTGAGACCCCATCTCCATTACCAACTTTTAAGGTTCGGAAAGAGAAACTGGGGGACCGAATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTCCACGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTCAATGTTTTGAGCACACCATATATGAAAAATGGAGCTCCCATTCAACAATACCAGGGTTGTGAGAATGGGAAGGAGGCAGAAGGGGAAAAAGAAGATCTAAGAAGCCGAGGGCTGTGTTTGGTACCAATTTCAAGCACATTTCCGGTGACGAATGAGACCACTGTTGATTTCTGGACGCCAACATTTGGAGGCCCACTCATTGGCAGATAG 1404 0.4309 MAEEFQAGICGETWWNINPTRSVFPLMSSSSTCSVAANDHAANYSTWQTDFVDLKATRSCAEEINNINMVSDGSLGFVDAQKAQQSESVSGGTGGSILMDSTLQIMGFGLSSSNSSNWNQSLFSGRPESNFHSVLEEETVIDSSNNSQIQKDWSPKNFSSAGGSQVSTIDGFKQMNQEFSLDEQSLNCVTSSTGGFPNSYGYPSTLIYEADPQPQSQNSLFTNPSAMSYSSTPTVYGTSSNELSPTWSKVSTSLMKPSMPKQQLSGLHFSNNTPFWNASAEALDDIRAGVFASSSQGQYQTPNFEEKKLSSPSSTLLSKQLKREESPDTGKKSCSELPALKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTPYMKNGAPIQQYQGCENGKEAEGEKEDLRSRGLCLVPISSTFPVTNETTVDFWTPTFGGPLIGR. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05204 467 MobiDBLite consensus disorder prediction 321 335 - -
Seca5g05204 467 MobiDBLite consensus disorder prediction 295 335 - -
Seca5g05204 467 Gene3D - 355 414 IPR036638 GO:0046983
Seca5g05204 467 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 414 IPR036638 GO:0046983
Seca5g05204 467 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 394 IPR011598 GO:0046983
Seca5g05204 467 FunFam Transcription factor bHLH123 family 355 417 - -
Seca5g05204 467 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 158 446 - -
Seca5g05204 467 CDD bHLH_AtbHLH_like 351 402 IPR045239 -
Seca5g05204 467 MobiDBLite consensus disorder prediction 142 165 - -
Seca5g05204 467 MobiDBLite consensus disorder prediction 295 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05204 Seca-Chr5 109195919 109198236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05204 260 462 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 54.717 1.66e-58 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05204 - - gmx:100794682 598.201