Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca5g05201 | ATGGCGGGTCAGCTTCCGGAGCATTTCAAGTGTCCCATTTCGCTCGAAATCATGTCCGACCCGGTTATCCTCCACTCGGGTCACACATTCGACCGTTCTTCAATCCAACGCTGGCTCGACGCCGGTCACCGTACTTGCCCAATTACCAAACTACCCCTCCCTGAACACGCTTCCCTCATCCCCAACCACGCCCTTCGAAGCTTGATTTCCAACTTTGCCCCTATCTCCCCTCTCCTCCACCACCCTCCCCCGCCCCAACCAGAAACCCTAATCTACACCCTCACCTCTCCCTCCTCCTCCTCCCACTCCAAATTCGACTCTCTCCGACAACTCACCCAACTCGCCAACACTGACTCCCTCTTCCGCCGCCGGCTAACCGACTCCGCCGTCGTGCCGGCACTTCTCTCCTGCGTCGACTCCGCCGACGACTCCCTCCGCGAGAAAGCCCTCTCCCTCTTGCTTAACCTCAGCCTCGACGACGACAACAAGGTTGGCCTGGTGGCCGAGGGCGTTGTTGGCCGCGTCGTCGCTGTTCTCACCGCCAGCCCCTCCGATTGCCGCGCCGTGGCGGCGACTCTGCTGACAAGCTTGGCAGTCGTGGAGGTGAACAAGGCGACGATCGGCGCGTACCCGCACGCGATTGAAGCTCTGGTTTCCCTCGTTCGGGACGGGAAAGGGAGAGAGAAGAAAGAAGCGGCTACGGCGCTGTACGCTATCTGTTCTTTCCCTGATAATCGGAGAAGAGCGGTGGAATGTGGGGCGGTCCCCGTTTTGCTTCGAAGTGCTGATTCTGGACTTGAAAGGAGTGTTGAAGTTTTAGGGGTTCTGGCTAAGTGTAAAGAAGGGAGGGAGCAGATGGAAAGGTTTCGTGGGTGTGTGCAGATTCTGGCTCGGGTGTTGATCAATGGAACCTCAAGAGGGGTTCAGTATGCTCTGTTGGCTCTCAATAACCTCTGTTGTAACAGTGAAGCCACTGTTCTTGAGGCCGTGAAAGCTGGGGTTTTGGAAATTTGTCTCGGGTTGCTGCATGATGATAATGAGAAGGTGAGGAGGAATTCCTCGTGTTTGATTCAGGTTCTCCGTGGCAACCATGGGAGGATGAGTTGA | 1107 | 0.5664 | MAGQLPEHFKCPISLEIMSDPVILHSGHTFDRSSIQRWLDAGHRTCPITKLPLPEHASLIPNHALRSLISNFAPISPLLHHPPPPQPETLIYTLTSPSSSSHSKFDSLRQLTQLANTDSLFRRRLTDSAVVPALLSCVDSADDSLREKALSLLLNLSLDDDNKVGLVAEGVVGRVVAVLTASPSDCRAVAATLLTSLAVVEVNKATIGAYPHAIEALVSLVRDGKGREKKEAATALYAICSFPDNRRRAVECGAVPVLLRSADSGLERSVEVLGVLAKCKEGREQMERFRGCVQILARVLINGTSRGVQYALLALNNLCCNSEATVLEAVKAGVLEICLGLLHDDNEKVRRNSSCLIQVLRGNHGRMS. | 369 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca5g05201 | 368 | CDD | RING-Ubox_PUB | 6 | 53 | IPR045210 | - | |
| Seca5g05201 | 368 | Gene3D | - | 211 | 365 | IPR011989 | - | |
| Seca5g05201 | 368 | ProSiteProfiles | U-box domain profile. | 4 | 79 | IPR003613 | GO:0004842|GO:0016567 | |
| Seca5g05201 | 368 | Pfam | U-box domain | 6 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
| Seca5g05201 | 368 | SUPERFAMILY | RING/U-box | 3 | 72 | - | - | |
| Seca5g05201 | 368 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 76 | IPR013083 | - | |
| Seca5g05201 | 368 | SMART | arm_5 | 118 | 158 | IPR000225 | GO:0005515 | |
| Seca5g05201 | 368 | SMART | arm_5 | 203 | 241 | IPR000225 | GO:0005515 | |
| Seca5g05201 | 368 | SMART | arm_5 | 159 | 199 | IPR000225 | GO:0005515 | |
| Seca5g05201 | 368 | SMART | arm_5 | 279 | 320 | IPR000225 | GO:0005515 | |
| Seca5g05201 | 368 | SMART | arm_5 | 321 | 362 | IPR000225 | GO:0005515 | |
| Seca5g05201 | 368 | FunFam | RING-type E3 ubiquitin transferase | 4 | 76 | - | - | |
| Seca5g05201 | 368 | PANTHER | U BOX DOMAIN-CONTAINING | 6 | 341 | - | - | |
| Seca5g05201 | 368 | SMART | Ubox_2 | 8 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
| Seca5g05201 | 368 | Gene3D | - | 85 | 210 | IPR011989 | - | |
| Seca5g05201 | 368 | SUPERFAMILY | ARM repeat | 88 | 360 | IPR016024 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca5g05201 | Seca-Chr5 | 109167772 | 109168878 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca5g05201 | 1 | 362 | U-box Gene Family | AT4G21350 | 60.705 | 1.38e-148 | 422 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca5g05201 | - | - | pcin:129286672 | 505.368 |