Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05200 ATGGAGAAAACAGAGTTCACCCTTCTATTTCTTGCAACTTGTTGCTATGTGATATCTCTGTTTCCAATAATTTTGGTAGCAGAGGATAGCATAACTCCACCACAAGCCATCAGTGGCAACCAGACACTAGTCTCACCTGCCCAAAATTTTGAACTGGGTTTCTTCAGTCCTGGCACTTCCACTTACAGATATCTTGGAATATGGTACAAGCACATTCCAAAGCAAACTGTTATTTGGGTTGCAAATAGGGACAAACCACTTGTTAACTCTGGTGGCTCCTTAAAATTCAGCAATGATGGGAACCTCATCCTTCTCAGCCACACTGGAAGTGTTCTATGGTCCTCAAATTCCTCTGGACCTGTAAGAAACCCAATAGCACAGCTTCTAGACTCTGGAAACTTTGTTTTGAAGGACTTTGAAAATGAGGGATATTTGTGGCAGAGTTTTGATTATCCATCTGACACATTGCTACCAGGAATGAAGCTTGGTTGGAATTTCAAAACTGGCTTGAACATACATTTGACTTCTTGGAAAAACAGTGATGATCCTTCTTCAGGAGAATATACCTACAGTGTGGATCCCCGTGGCCTTCCTCAGCTTTTTCTCCATAAGGGAAACAAGAAGGTCTTCAGAAGTGGACCATGGTATGGTCAACAATTTAAAGGTGACCCAGTTCTCAATCAAAATCCAATTTTCAAACCTATATTTGTTTTTGATTCTGATGAAGTATCTTACTCATTTGAGACTAAGGACAATATCATTTCAAGATTTGTGCTCAGTCATTCTGGCTTGATTCAGCATTTCTCATGGAATGATCATCATTCCAGTTGGTTCTCTGAATTCACAATTCAAGGGGACCATTGTGATGACTATGGCCTTTGTGGTGCTTATGGAACTTGCAACATCAAAAGCTCTCAGATTTGCAAGTGTTTGAAGGGTTTTGAGCCTAGGCTTCCACAAGAATGGAAAAAGTTTCAGTGGTCAGGTGGATGTGTTGTTGTTAGGAAGAATTCTCAGGTTTGCAGAAATGGAGATGTATTTAAGCTGTTTACAGGAATGAAACTACCAGATGCTGCAGAGTTTCATACAAATTATAGCATTAGCATTGATCACTGTGAGGCAGAATGCTCCAAGAACTGCTCTTGTGTAGCTTATGCTAAACTAGACATAAATGCAAGTGGAAAAGGCTGTATTGCTTGGTTTGGGGAGTTATTTGACATAAGAGATGTTTCTGTGAATGGGCAAGATTTCTATGTGAGAGTTCCAGATTCAGAACTAGGTAAGAACATTCAAGATTCAAATGTTGACGGAAACAAAGGGAAGAAACTAATACTGCTTCCTGTGACTATATCAGTAGCCTCAACTATTGTTGTCTCAGCATTATGGTTGATAATTAAGAAATGGAGAAGAAAAGGGGGCGGAGAGACAGATATGCAAATTATGCAATTTAGTATTGGCAGAAGTAGGAGTGAGAGGAATGAGTTTGAACTCCCATTATTTGAGATTTCCAATATTGAAGCCGCCACAGGAAATTTCTCTATTTACAATAAGATTGGAGAAGGTGGATTTGGTCCTGTATACAAAGGTCAACTTCCATCAGGACAAGAAATAGCCGTGAAAAGGCTGTCAGAGAGTTCAGGACAAGGCCTGCAGGAGTTCAAGAATGAGGTTATTTTGATCTCCCAGCTTCAGCATCGAAATCTTGTCAAGCTTCTGGGTTGTTGCATTCAGGGAGAAGATAAAATGTTGGTCTATGAGTACATGCCAAATAGAAGCTTGGACTCCTCATTATTTGATGAAACCAAACGTTCTGTGCTTGATTGGCAAAAGAGGCTAGACATTATTATTGGCATTGCTCGGGGAATTCTCTACCTTCACAGAGATTCAAGACTAAGAATAATCCATAGGGACCTGAAAGCAAGCAATGTTCTTTTAGACAGTGAAATGAACCCCAAAATTTCTGACTTTGGAATGGCAAGAATGTTTGGTGGAGATCAAACTGAAGCAAAGACCAAGAGTATAGTTGGAACCTATGGATATATGCCCCCAGAGTATGCAATGGATGGACACTTCTCTTTCAAATCGGATGTTTTTAGCTTTGGGGTTTTACTCTTAGAGGTGTTGAGCGGCAAGAAAAACAAAGGATTTCTTCACCCAGATCACAAGCTGAATCTCCTAGGCCATGCATGGAAGGTTTGGAATGAAGATAGGGCCTTGGAGGTGATGGATCCATTGCTTGAGAATCAGTTTCCGACCTCTGGAGCATTAAGGTGTATTCAAGTGGGTCTTTTATGCGTTCAACAATGCCCAGAAGACAGGCCAACAATGTCAACAGTGCTTTTGATGTTGGACAGTGAGAGTGTGTTGCTTCCCCAACCTGGAAGGCCAGGATTATATTCAGAGAGATGTTTCTTAGAGACAGATTCATCATCACGTGGTGGACTGAATTCTGGGTCCAGTGACATAACCGCTTTAGTAGAGGGTCGCTAG 2490 0.4096 MEKTEFTLLFLATCCYVISLFPIILVAEDSITPPQAISGNQTLVSPAQNFELGFFSPGTSTYRYLGIWYKHIPKQTVIWVANRDKPLVNSGGSLKFSNDGNLILLSHTGSVLWSSNSSGPVRNPIAQLLDSGNFVLKDFENEGYLWQSFDYPSDTLLPGMKLGWNFKTGLNIHLTSWKNSDDPSSGEYTYSVDPRGLPQLFLHKGNKKVFRSGPWYGQQFKGDPVLNQNPIFKPIFVFDSDEVSYSFETKDNIISRFVLSHSGLIQHFSWNDHHSSWFSEFTIQGDHCDDYGLCGAYGTCNIKSSQICKCLKGFEPRLPQEWKKFQWSGGCVVVRKNSQVCRNGDVFKLFTGMKLPDAAEFHTNYSISIDHCEAECSKNCSCVAYAKLDINASGKGCIAWFGELFDIRDVSVNGQDFYVRVPDSELGKNIQDSNVDGNKGKKLILLPVTISVASTIVVSALWLIIKKWRRKGGGETDMQIMQFSIGRSRSERNEFELPLFEISNIEAATGNFSIYNKIGEGGFGPVYKGQLPSGQEIAVKRLSESSGQGLQEFKNEVILISQLQHRNLVKLLGCCIQGEDKMLVYEYMPNRSLDSSLFDETKRSVLDWQKRLDIIIGIARGILYLHRDSRLRIIHRDLKASNVLLDSEMNPKISDFGMARMFGGDQTEAKTKSIVGTYGYMPPEYAMDGHFSFKSDVFSFGVLLLEVLSGKKNKGFLHPDHKLNLLGHAWKVWNEDRALEVMDPLLENQFPTSGALRCIQVGLLCVQQCPEDRPTMSTVLLMLDSESVLLPQPGRPGLYSERCFLETDSSSRGGLNSGSSDITALVEGR. 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05200 829 Pfam PAN-like domain 341 407 IPR003609 -
Seca5g05200 829 Pfam Protein tyrosine and serine/threonine kinase 514 780 IPR001245 GO:0004672|GO:0006468
Seca5g05200 829 CDD B_lectin 37 152 IPR001480 -
Seca5g05200 829 Gene3D Phosphorylase Kinase; domain 1 477 587 - -
Seca5g05200 829 PIRSF SRK 1 827 IPR024171 GO:0004674
Seca5g05200 829 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Seca5g05200 829 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 774 - -
Seca5g05200 829 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Seca5g05200 829 SMART blect_4 34 152 IPR001480 -
Seca5g05200 829 SMART ntp_6 342 421 IPR003609 -
Seca5g05200 829 SUPERFAMILY Protein kinase-like (PK-like) 493 783 IPR011009 -
Seca5g05200 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Seca5g05200 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 791 - -
Seca5g05200 829 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Seca5g05200 829 ProSiteProfiles Protein kinase domain profile. 512 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05200 829 MobiDBLite consensus disorder prediction 809 829 - -
Seca5g05200 829 CDD PAN_AP_plant 342 422 - -
Seca5g05200 829 SMART serkin_6 512 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05200 829 Gene3D - 23 149 IPR036426 -
Seca5g05200 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 476 587 - -
Seca5g05200 829 MobiDBLite consensus disorder prediction 809 823 - -
Seca5g05200 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 183 IPR036426 -
Seca5g05200 829 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Seca5g05200 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 149 - -
Seca5g05200 829 Pfam D-mannose binding lectin 76 178 IPR001480 -
Seca5g05200 829 CDD STKc_IRAK 518 784 - -
Seca5g05200 829 Gene3D Transferase(Phosphotransferase) domain 1 588 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05200 Seca-Chr5 109151368 109155197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05200 439 820 Receptor kinase-like Gene Family AT4G05200 52.332 1.47e-127 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g05200 PK_Tyr_Ser-Thr 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05200 - - gmx:100804024 1458.74