Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05199 ATGAGAGGTTCTACAATCCTTCAATTCTTCTTTTTTTGTACCTTCACTTTACCCGCGTTCTTTTCCGGTATTGTAGTATCCGTGGATACCTTAACTGCAACTCAATCTCTTGGAGCTAACCAAACCCTTGTATCTCCACAACAAGTGTTTGAATTTGGCTTCTTTAATACAAGCAGTTTGAGATGGTACTTGGGTATATGGTACAAGGATTTTCCTGATAAAACAGTAATTTGGGTGGCAAACAGAGACACCCCACTTGAAAATTCCAATGGAACTCTCAAGATTGGAGATAGGGGAAACCTGCTTCTTCTCAATCAAACAGGCAACCCCATATGGTCATCAAATCAAACCACTGCTGTTACAAACCCGGTTCTTAAGCTTTTTGATACTGGGAATTTGATTCTCATGGAAGCAAACGAGAAAGACACCAACAACTATTTATGGCAGAGCTTTGATGATCCAACAGATACTTTGTTACCAGGCATGAAGCTTGGTTGGAACCTAGACACTGGTGTGGAGCGCCGCATAACATCATGGAGAGGCCAAAATGATCCATCAATAGGAGATTCTTATTTCACTCTAAATTACCATGGGATACCAGATATTTTCTTATGGAACAAACAACAAAGGGTGTTCCGAACTGGACCATGGAATGGTGAGAGGTTTGGTGGGGTACCAATACTAAACACAATTGCTGCTCTTAATGATAGTATAGTTGCTGATGAACATCAAGTGTATTACCTCCCTTCAATGCTCAATCAGTCAAGCCTGTCCAGACTTGTTGTGAACTGGACAGGAACAATTGAACGGTATGCATGGATAGAGAGTAGTCAAAGTTGGAGTCAAATATGGATTGCACCAAATGCCGATTGTGATCACTATGGAGCTTGCGGTCCCTTTGGTATATGTGACTCAAATAGTTTCCCAATGTGCCAGTGTATTCAAGGATTCAATGTCAAGGATCAGGGCCAATGGGATTTGAAAAATTTTTCTGATGGGTGTACTAGGAAGACAGAATTGGAATGTGGGAAAGACAAGTTCTTGAACATGACCAATGTGCAATTGCCAGATGCCACAAAGGTGTTTGTGGACAACAACATGACCCTATTGGAATGTAGAAATATGTGCCAGATGAATTGCTCTTGTACTGCCTATGCTAATGCAGAGATTACTAATGGTGGAACTGGTTGCGTGATGTGGGCTGATAATCTCATTGACATGAGGCAGTTTTCTGAAGGTGGTCAAGATCTCTATGTCAAATTAGCAGCTTCTGATGTAGATGACAATGGCACAGGATCTGTTGGTGGCTCTCACAAGAAAAAGAATTCAGGAAAGATTGCAGGAATTACAGTTGCTGTATTTATAGTAATTTTGGGGGTGATTATGTTCATTTTGTGGAAGAAGAGAAAAATTCTGATTATATTGAGCTGGAAAAAGAAGCAGAATGGTAATTCTGAAAGAGGCCAGAAGACGTTGCTACCTGAGGTAATAATACATTCAATAAATAAAGACAATGTAGATGAAAGGAACACAGATGACCTGGAGTTGCCATTGTTTGATTTTAATACCATAACACAAGCTACAAACTACTTCTCTCTAGCAAATAAACTTGGAGAAGGAGGCTTTGGAAGCGTTTACATGGGTAGGCTAGTGGATGGCCAAGAAATTGCTGTGAAAAGGCTATCAACAAGCTCTGGGCAAGGAAATGAGGAGTTCCTGAATGAGGTAAGATCCATTGCAAAGCTTCAACATCGAAATCTTGTACGGCTGTTTGGTTGCTGCATTGAGAAGGAAGAGAAGATGTTGATCTATGAGTACATGGAGAATAAGAGCCTAGATTCTATTTTGTTTGACACAGCAAAGAGTTCCACACTAGACTGGCCAATGCGCTTCAACATTATATGTGGAATAGCCAAAGGGCTTCTTTATCTCCATCATGACTCTAGATTTAGAATTATCCATAGGGATCTCAAGGCAAGCAACATTCTTCTTGATAGAGAAATGAATCCAAAGATATCAGATTTTGGGGTTGCTAGAATTTTTGACACTGATCAAACACATGCAAACACAAGGAGAGTTGTTGGAACATATGGTTATATGTCTCCTGAATACGCAATGGGGGGATTCTTTTCAGTGAAATCTGATGTTTACAGTTTTGGAGTTCTTGTGCTAGAGATCATAAGTGGCAAGAAGAACCGAGGATTTTATTCCTCAGATGACTTAAATCTTATTGGACATGCATGGAGGCTATGGAAAGAAGGGAATGCATTAGAAATAATGGATTCGTCATTTATTGATTCATATTCAGAATCTGAAGTTCTGAGATGCATACATGTTGCGTTCATATGTATCCAAGAACGAGCAGAAGACAGACCCACAATGTCTAATGTGGTGTTAATGTTGAGTAGTGAAAGTGCATCAATGGCAGAGCCTAAACACCCCGGTTTCGTCCTCGGAAGGAGTTCCGGCGAAAGCGACTCTTCTTCGGCTAGGCAAGATGAGTTATACACGATAAACAAAGTCACAGTTACAAGACTAGATGGCAGGTAG 2550 0.4043 MRGSTILQFFFFCTFTLPAFFSGIVVSVDTLTATQSLGANQTLVSPQQVFEFGFFNTSSLRWYLGIWYKDFPDKTVIWVANRDTPLENSNGTLKIGDRGNLLLLNQTGNPIWSSNQTTAVTNPVLKLFDTGNLILMEANEKDTNNYLWQSFDDPTDTLLPGMKLGWNLDTGVERRITSWRGQNDPSIGDSYFTLNYHGIPDIFLWNKQQRVFRTGPWNGERFGGVPILNTIAALNDSIVADEHQVYYLPSMLNQSSLSRLVVNWTGTIERYAWIESSQSWSQIWIAPNADCDHYGACGPFGICDSNSFPMCQCIQGFNVKDQGQWDLKNFSDGCTRKTELECGKDKFLNMTNVQLPDATKVFVDNNMTLLECRNMCQMNCSCTAYANAEITNGGTGCVMWADNLIDMRQFSEGGQDLYVKLAASDVDDNGTGSVGGSHKKKNSGKIAGITVAVFIVILGVIMFILWKKRKILIILSWKKKQNGNSERGQKTLLPEVIIHSINKDNVDERNTDDLELPLFDFNTITQATNYFSLANKLGEGGFGSVYMGRLVDGQEIAVKRLSTSSGQGNEEFLNEVRSIAKLQHRNLVRLFGCCIEKEEKMLIYEYMENKSLDSILFDTAKSSTLDWPMRFNIICGIAKGLLYLHHDSRFRIIHRDLKASNILLDREMNPKISDFGVARIFDTDQTHANTRRVVGTYGYMSPEYAMGGFFSVKSDVYSFGVLVLEIISGKKNRGFYSSDDLNLIGHAWRLWKEGNALEIMDSSFIDSYSESEVLRCIHVAFICIQERAEDRPTMSNVVLMLSSESASMAEPKHPGFVLGRSSGESDSSSARQDELYTINKVTVTRLDGR. 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05199 849 SUPERFAMILY Protein kinase-like (PK-like) 514 801 IPR011009 -
Seca5g05199 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 607 809 - -
Seca5g05199 849 MobiDBLite consensus disorder prediction 811 833 - -
Seca5g05199 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 496 606 - -
Seca5g05199 849 Pfam D-mannose binding lectin 75 180 IPR001480 -
Seca5g05199 849 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544
Seca5g05199 849 Gene3D Transferase(Phosphotransferase) domain 1 607 813 - -
Seca5g05199 849 Pfam Domain of unknown function (DUF3403) 803 849 IPR021820 GO:0004674
Seca5g05199 849 ProSitePatterns Protein kinases ATP-binding region signature. 537 559 IPR017441 GO:0005524
Seca5g05199 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 151 - -
Seca5g05199 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Seca5g05199 849 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 185 IPR036426 -
Seca5g05199 849 Pfam PAN-like domain 342 407 IPR003609 -
Seca5g05199 849 Gene3D Phosphorylase Kinase; domain 1 504 606 - -
Seca5g05199 849 CDD B_lectin 34 154 IPR001480 -
Seca5g05199 849 SMART serkin_6 531 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05199 849 SMART ntp_6 342 421 IPR003609 -
Seca5g05199 849 ProSiteProfiles Bulb-type lectin domain profile. 28 148 IPR001480 -
Seca5g05199 849 PIRSF SRK 2 849 IPR024171 GO:0004674
Seca5g05199 849 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 792 - -
Seca5g05199 849 CDD STKc_IRAK 537 801 - -
Seca5g05199 849 SMART blect_4 34 154 IPR001480 -
Seca5g05199 849 Pfam Protein tyrosine and serine/threonine kinase 533 799 IPR001245 GO:0004672|GO:0006468
Seca5g05199 849 Gene3D - 24 151 IPR036426 -
Seca5g05199 849 CDD PAN_AP_plant 338 422 - -
Seca5g05199 849 ProSiteProfiles Protein kinase domain profile. 531 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05199 849 ProSiteProfiles PAN/Apple domain profile. 342 422 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05199 Seca-Chr5 109143608 109146912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05199 439 816 Receptor kinase-like Gene Family AT4G23190 52.083 5.39e-130 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g05199 PK_Tyr_Ser-Thr 5.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05199 - - aip:107621503 1151.73