Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05198 ATGAGGGAACCGCATGATTTTAGGAACATCTCTGGACATAGACACTGCAAAATGAGAGGTTCTACAATCCTTCAAATCTGCTTTTTTTGGACCTTCACTTTATCAGCATTCTTTTTCAACACCGCACTCTCGGCGGATACCTTAACTGCAACTCAATCTCTTGGAGCAAACCAAACCCTTGTATCTCCACAGCAAGTATTTGAATTTGGCTTCTTTAATACAAGCAGTTCGAGATGGTACTTGGGTATATGGTACAAGGACTTTCCTGACAAAACAGTGATTTGGGTGGCAAACAGAGACACCCCACTTGGAAATTCCAATGCAACTCTCAAGATTGGAGATAGGGGAAACCTGCTTCTTCTCAATCAAACAGGTAACCCAATATGGTCATCAAATCAAACCACTGCTGCTACAAACCCAGTTCTTAAGCTTTTTGATAATGGGAATTTGATTCTCATGGAAGCAAACGAGAAAGACACCAACAACTATCTGTGGCAGAGCTTTGATGATCCAACAGATACTTTGTTAGCAGGTATGAAGCTGGGTTGGAACTTGGACACTGGCGTGGAGCGGCGTATAACATCATGGAAAAGCCAAGATGATCCATCCATAGGAGATACTTATTTCAGTTTAAATTACCATGGGATACCCGATGTTTTCTTATGGAACAAACAGCAAAGGGTGTTTAGAACTGGACTATGGAATGGTGAGAGGTTTGGTGGAGTACCAATACTAAACACAATTGCTCCCCTTAATGACAGTATAGTTGCTGATAAACATCAAGTGTATTACCTCCCTTCATCGCTCAATCAATCTAGCCTGTCCAGACTTATTGTGAACTGGACAGGAGTAATTGAAAGGTATGCATGGATAGAGAGTAGTCAGAGTTGGAGTAAAATATGGTCTGCACCTGATGGTGATTGTGATCATTATGGAGTGTGCGGTCCCTTTGGTATATGTGACTCAAATAGTTTCCCAGTATGCCAGTGTATTCAAGGGTTTAATGTCAAGAATCAAGGGCAATGGGATTTGAGAAATTTTTCTGATGGGTGTACAAGGAAGACAGAATTGGAATGTGGGAAAGACAAGTTTTTGCACAAGACAAATGTGCAGCTGCCAGATGCCACAAAGGTTTTTGTGGACAAAAACATGACCCTATTGGAATGTAGAAATATGTGCCAGATGAATTGTTCTTGTACTGCCTATGCTAATGCAGAGATTACTAATGGTGGGACTGGTTGCGTGATGTGGACTGATAATCTCATTGACATGAGGCAGTTTTCTGCAAATGGTCAAGATCTCTATGTCAAATTAGCAGCTTCTGATGTAGATGACAGTGGCACAGGATCTCCTGGTGGGTCTGACAAGAAAAACAATGCAGGAATGATTGTAGGAATTGCAGTTGCTGTAGCTATAGTAATTTTTGGAGTGATTATATTCATTTTGTGGAAGAAGAGAAAACTGCATAGTATATTGAGGTGGAATAAGAAGCAGGATGGTAATTCTGAGAGAGGTCAGAAGGCGCTGCTACCTGAGGTAATAATGCATTCAATTAATAGGGAACATGCAGATGAAAGGAACATGGATGACCTGGAGTTACCATTGTTTGATTTTAATACCATAACACAAGCTACAAACTACTTCTCTCTAGCAAACAAACTTGGAGAAGGAGGCTTTGGAAGCGTTTACATGGGTAGGCTGGTGGATGGCCAAGAAATTGCTGTGAAAAGGTTATCAACTAGCTCTGGGCAAGGAAATGAGGAGTTCAAGAATGAGGTCAGATCCATTGCAAAGCTTCAACATCGAAATCTTGTACGACTCTTTGGTTGTTGCATTGAGAAAGAAGAGAAGATGTTGATCTATGAGTACATGGAAAATAAGAGTCTAGATTCTATTTTATTTGACACAGAGAAGAGTTCCATACTAGACTGGCCAATGCGTTTCAACATTATATGTGGAATAGCCAAGGGGCTTCTTTATCTCCATCATGACTCCAGATTTAGAATTATCCATAGGGATCTGAAGGCAAGCAATATTCTTCTTGATAGAGAAATGAACCCAAAGATATCAGATTTTGGGATTGCTAGAATTTTTGACAGTGATCAAACACAAGCAAACACAAGGAGAGTTGTTGGAACATATGGCTATATGTCTCCTGAATATGCAATGGGTGGATTCTTTTCAGTGAAATCTGATGTTTTCAGTTTTGGAGTTCTCGTGTTAGAGATCATAAGTGGCAAGAAGAACAGAGGATTTTATTCCAATGATGACATAAATCTTCTTGGACATGCATGGAGGCTGTGGAAAGATGGGAATGCATTGGAACTAATAGATCCATCATTTGGTGATTCATATTCAAAATCTGAAGTTGTAAGATGCATACATGTTGGTCTCATATGTGTCCAAGAACGGGCAGAAGACAGGCCAACAATGTCTACTGTGGCCTTGATGTTGAGCAGTGAAACTTCATCAATACCAGAACCTAAACACCCTGGTTTTGTCCTTGGAAGGAGTTCCGATGAAACCGATTCTTCTTCGGCTAAATCTCACACGATAAACCAAGTCACAGTTACAAGACTAGATGGCAGCTTTGAGGAACCAGGACCACAGTTTGTTGCTACTGCACAGGATATTTTTGACAGTTACCAAAAGAATAGAGGCAAATCTCTGAAGTGGACTGTGACACCAAATAGACTTTATCTGCGAGGTCCAGGAAGCTCCAAGAGTCGCTACTTGGGAATATGGTACAAGAATATCACACCCCAAACAGTTGTTTGGGTTGCAAACAGAGAAAAACCACTTAATGATTCGAGTGGAAACTTAACCATTGGTGCTGATGGGAACATTTTACTTGTTGATGGAGCAGGTAACAGAATATGGTTTACAAACTCATCAAGATCAATTCAAGAGCCAATTGCAAAGCTGTTAGATTCTGCAAACTTAGTTTTGATGGATGGAAAGAACAATGATTCTTATAGTTACATATGGCAAAGCTTTGATTATCCAACAGACACAATGTTACCAGGCGTGAAGTTGGGTTGGGATAAGACCTCAGGTATGAACAGATATTTGACTTCATGGAAGAATGCTAATGACCCCTCTCCTGGGAGCTTTACCTACAGCTTTGACCACAAAGAATTTCCTGAGTTGGTAATCCGCCAAGGAATGAATATCACATTCAGAAGTGGAATTTGGAATGGCATTCGTTTTAATTCAGATGATTGGACATCATTTACAGGAATTACAGCCTTCAGGCCTCAACTTTCAGTGACCAACAATGAGATAGTATATTGGGATGAACCTGGAGATAGATTGTCAAGGTTTGTGTTAAAGGATGATGGACTGCTTGAAAGATATATATGGGACAGCAAAGTTCTTCAGTGGATTGAAATGTATGAGGCAAGAAAAGACTTCTGTGATAATTATGGAGCATGTGGGAGTAATGGTGTTTGCAATATTAATGATGTGCCTGTTTACTGTGATTGTTTGAAAGGCTTCAAACCTAAATCACAAGAAGAATGGGATTCATTTAATCGCTCTAGTGGGTGCATAAGGAGAACACCATTAAACTGCACTCAAGGTGACAGATTTCAGAAATTAAGCAGGGTGAAACTTCCCATGTTGTTGCAATTCTGGACAAACAATAGCATGAGTCTTGGAGAATGTGAAGTGGAATGCTTGAAAAACTGTTCTTGCACTGCCTATGCAAATTCTGCCATAAATGAAGGGCCCCATGGATGCTTGCTTTGGTTTGGGAATTTGATTGACATTAGGCTGCTTATAAGTCAAGAGGATGTACAACTGGATCTTTATGTAAGGTTAGCCGCTTCAGAAATAGACTCCACCACTAATGCTAGTAAAAGGAGAAAGATGGCACTGATTATTTCAGCATCTTTGGCACTGCTTCTTTTGTGTACCCTTTTCTACCTTTATAAGAAGTATACTAAACGGAAGAGCACTACTGATTTGGGGCATGGAAATCAGAATGAAGATCAAACATCACCTCTTTTTGATACAGAAACTATTCTAGCAGCTACAAACAATTTTTCGATTGAGAACAAGATTGGGGAGGGGGGCTTTGGCCCAGTATACAAGGGTAAATTGGCTCAAGGACAAGAAATAGCTGTGAAAAGGCTATCAAAAACCTCAAAACAAGGCATGTCAGAGTTTATGAATGAAGTTGGATTGGTAGCCAAACTTCAACACCGTAATCTTGTGAGTGTTTTGGGTGGGTGCACTCAAGGAGAAGAAAGAATGTTGGTCTATGAATACATGCCTAATGGTAGTTTGAACCGCTTCATTTTTGATCCTATACAAGGAAAATTTTTACAATGGAGGAAACGATATGAAATTATTGTGGGGATTGCTCGAGGACTACTTTATCTTCATCAAGATTCAAAACTAACAATCATTCACAGGGATCTAAAAACTAGTAATATTCTACTTGATAGTGAATTGAACCCCAAAATTTCTGATTTTGGTATGGCCCACATCTTTGAAGGAGATCATTCTGCAGTAACAACAAATAGAATTGTTGGGACAGTTGGTTATATGTCCCCTGAGTATGCAAGAAACGGGCTTCTCTCCCTAAAATCTGATGTATTTAGCTTTGGAGTTATTGTCTTAGAGATATTGAGTGGTGGTCGAGGCCGTACTCAACCAAATTTAATGAATTAA 4677 0.3985 MREPHDFRNISGHRHCKMRGSTILQICFFWTFTLSAFFFNTALSADTLTATQSLGANQTLVSPQQVFEFGFFNTSSSRWYLGIWYKDFPDKTVIWVANRDTPLGNSNATLKIGDRGNLLLLNQTGNPIWSSNQTTAATNPVLKLFDNGNLILMEANEKDTNNYLWQSFDDPTDTLLAGMKLGWNLDTGVERRITSWKSQDDPSIGDTYFSLNYHGIPDVFLWNKQQRVFRTGLWNGERFGGVPILNTIAPLNDSIVADKHQVYYLPSSLNQSSLSRLIVNWTGVIERYAWIESSQSWSKIWSAPDGDCDHYGVCGPFGICDSNSFPVCQCIQGFNVKNQGQWDLRNFSDGCTRKTELECGKDKFLHKTNVQLPDATKVFVDKNMTLLECRNMCQMNCSCTAYANAEITNGGTGCVMWTDNLIDMRQFSANGQDLYVKLAASDVDDSGTGSPGGSDKKNNAGMIVGIAVAVAIVIFGVIIFILWKKRKLHSILRWNKKQDGNSERGQKALLPEVIMHSINREHADERNMDDLELPLFDFNTITQATNYFSLANKLGEGGFGSVYMGRLVDGQEIAVKRLSTSSGQGNEEFKNEVRSIAKLQHRNLVRLFGCCIEKEEKMLIYEYMENKSLDSILFDTEKSSILDWPMRFNIICGIAKGLLYLHHDSRFRIIHRDLKASNILLDREMNPKISDFGIARIFDSDQTQANTRRVVGTYGYMSPEYAMGGFFSVKSDVFSFGVLVLEIISGKKNRGFYSNDDINLLGHAWRLWKDGNALELIDPSFGDSYSKSEVVRCIHVGLICVQERAEDRPTMSTVALMLSSETSSIPEPKHPGFVLGRSSDETDSSSAKSHTINQVTVTRLDGSFEEPGPQFVATAQDIFDSYQKNRGKSLKWTVTPNRLYLRGPGSSKSRYLGIWYKNITPQTVVWVANREKPLNDSSGNLTIGADGNILLVDGAGNRIWFTNSSRSIQEPIAKLLDSANLVLMDGKNNDSYSYIWQSFDYPTDTMLPGVKLGWDKTSGMNRYLTSWKNANDPSPGSFTYSFDHKEFPELVIRQGMNITFRSGIWNGIRFNSDDWTSFTGITAFRPQLSVTNNEIVYWDEPGDRLSRFVLKDDGLLERYIWDSKVLQWIEMYEARKDFCDNYGACGSNGVCNINDVPVYCDCLKGFKPKSQEEWDSFNRSSGCIRRTPLNCTQGDRFQKLSRVKLPMLLQFWTNNSMSLGECEVECLKNCSCTAYANSAINEGPHGCLLWFGNLIDIRLLISQEDVQLDLYVRLAASEIDSTTNASKRRKMALIISASLALLLLCTLFYLYKKYTKRKSTTDLGHGNQNEDQTSPLFDTETILAATNNFSIENKIGEGGFGPVYKGKLAQGQEIAVKRLSKTSKQGMSEFMNEVGLVAKLQHRNLVSVLGGCTQGEERMLVYEYMPNGSLNRFIFDPIQGKFLQWRKRYEIIVGIARGLLYLHQDSKLTIIHRDLKTSNILLDSELNPKISDFGMAHIFEGDHSAVTTNRIVGTVGYMSPEYARNGLLSLKSDVFSFGVIVLEILSGGRGRTQPNLMN. 1559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05198 1558 ProSiteProfiles Bulb-type lectin domain profile. 45 165 IPR001480 -
Seca5g05198 1558 ProSiteProfiles PAN/Apple domain profile. 1191 1275 IPR003609 -
Seca5g05198 1558 CDD PAN_AP_plant 355 439 - -
Seca5g05198 1558 Gene3D - 885 999 IPR036426 -
Seca5g05198 1558 Gene3D - 40 168 IPR036426 -
Seca5g05198 1558 ProSiteProfiles Protein kinase domain profile. 548 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05198 1558 Pfam S-locus glycoprotein domain 1060 1170 IPR000858 GO:0048544
Seca5g05198 1558 Pfam S-locus glycoprotein domain 229 337 IPR000858 GO:0048544
Seca5g05198 1558 ProSitePatterns Protein kinases ATP-binding region signature. 554 576 IPR017441 GO:0005524
Seca5g05198 1558 CDD PAN_AP_plant 1187 1275 - -
Seca5g05198 1558 Pfam Domain of unknown function (DUF3403) 820 862 IPR021820 GO:0004674
Seca5g05198 1558 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 41 168 - -
Seca5g05198 1558 Pfam PAN-like domain 1191 1257 IPR003609 -
Seca5g05198 1558 Pfam PAN-like domain 359 424 IPR003609 -
Seca5g05198 1558 SMART ntp_6 1192 1274 IPR003609 -
Seca5g05198 1558 SMART ntp_6 359 438 IPR003609 -
Seca5g05198 1558 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 624 826 - -
Seca5g05198 1558 Pfam D-mannose binding lectin 923 1028 IPR001480 -
Seca5g05198 1558 Pfam D-mannose binding lectin 92 197 IPR001480 -
Seca5g05198 1558 Gene3D Transferase(Phosphotransferase) domain 1 1425 1556 - -
Seca5g05198 1558 Gene3D Transferase(Phosphotransferase) domain 1 624 828 - -
Seca5g05198 1558 SUPERFAMILY Protein kinase-like (PK-like) 1333 1548 IPR011009 -
Seca5g05198 1558 CDD B_lectin 894 1002 IPR001480 -
Seca5g05198 1558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1470 1482 IPR008271 GO:0004672|GO:0006468
Seca5g05198 1558 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 33 809 - -
Seca5g05198 1558 ProSiteProfiles Bulb-type lectin domain profile. 875 996 IPR001480 -
Seca5g05198 1558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 669 681 IPR008271 GO:0004672|GO:0006468
Seca5g05198 1558 CDD STKc_IRAK 554 818 - -
Seca5g05198 1558 SMART serkin_6 548 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05198 1558 SMART serkin_6 1349 1558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05198 1558 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1311 1424 - -
Seca5g05198 1558 CDD B_lectin 51 171 IPR001480 -
Seca5g05198 1558 Gene3D Hepatocyte Growth Factor 358 439 - -
Seca5g05198 1558 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 513 623 - -
Seca5g05198 1558 SUPERFAMILY alpha-D-mannose-specific plant lectins 924 1033 IPR036426 -
Seca5g05198 1558 SUPERFAMILY alpha-D-mannose-specific plant lectins 93 202 IPR036426 -
Seca5g05198 1558 ProSiteProfiles PAN/Apple domain profile. 359 439 IPR003609 -
Seca5g05198 1558 Pfam Protein tyrosine and serine/threonine kinase 1350 1549 IPR001245 GO:0004672|GO:0006468
Seca5g05198 1558 Pfam Protein tyrosine and serine/threonine kinase 550 814 IPR001245 GO:0004672|GO:0006468
Seca5g05198 1558 ProSiteProfiles Protein kinase domain profile. 1349 1558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05198 1558 SMART blect_4 884 1002 IPR001480 -
Seca5g05198 1558 SMART blect_4 51 171 IPR001480 -
Seca5g05198 1558 Gene3D Phosphorylase Kinase; domain 1 512 623 - -
Seca5g05198 1558 Gene3D Phosphorylase Kinase; domain 1 1311 1424 - -
Seca5g05198 1558 SUPERFAMILY Protein kinase-like (PK-like) 533 853 IPR011009 -
Seca5g05198 1558 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1425 1557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05198 Seca-Chr5 109130943 109139842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05198 451 833 Receptor kinase-like Gene Family AT4G23190 54.103 2.20e-131 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g05198 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05198 - - cave:132169979 1634.77