Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05193 ATGAATGGACAAAAAGAGATCCTGTGGTCAACAAATGTGTCCAACATTTCATCTAACACAACAGCTCTGCTTCTGGACACTGGCAATCTTGTTCTGCAAGAAAGTGCTACAGGAAAGATGGTATGGCAGAGTTTCCAACACCCTTGCAATACATTGTTGGATAAAATGAAACTTGTTTCGAATAAAACTAGAATGAAAATAACCTCATGGAAAAGTCCTCAGGATCCATCCATTGGTAACTTCTCTCTAAGTCTTGAACACCTAGAGATTCCTGAAGTTTTCACCTGGAGAGGAAGTCAACTATACTGGCGAAGTGGTCCATGGAATGGTCAGATCTTTCTTGGGACACCAGACATGAGCAATAATTATCTTGATGGATTTTACTTAGGTGGGAAAGGTGAAGGGGATGACAATTATTATCTCACTTATACCTCTGCAAATCAGTCTCAATTGATAATGTTTGTATTGAGTACTGAAGGAGGTATAGACCAATTATATTGGGATTATGAAAGGAGACATTGGTCAATCATGTGGTCAGTTCCAAAATCTGAGTGTGATGTTTATGGCATATGTGGAGCATTTGGAAGCTGTGACTCTACAAGTTCACCTATCTGCAGCTGTTTGCAAGGATTTGAGCCAAGGAATCCAGAGGAATGGAAGAGACAGAATTGGACTAGTGGATGTGTTAGGAAGGAACCACTGCAGTGTGAGAGAGTCAAAAATGGGAGTGAAGCTCAAGCTGACAATAGGGATGGCTTTCTGAAGCTGCAGAATACCAAAGTTCCAGACTTTGTCCAATGGTCATCTTCCCTTTATGATGATTGTAGAACTCAGTGCTTGCAAAACTGCTCTTGTTTAGCATATGCGTATGATGCAGGCATTGGTTGTATGTTATGGAGTGGAGACTTGATTGACATACAGAGGTTCTCAGCTGGAGGAACTGATCTTTACATTCGGGTTCCCTATTCCGAACTTGATGAAAAGAAGAAGAGTGCCACAGTGATCATTGCAGTTACAGTCACAATAGGAACAATTATCATTTTGACATGTGGATATGTCTTGTGGAAAAAGAAAATAAATCTGAAAATTCAGAGTCACAGAAGCCAGGTAAATGACCCTAGTAAATTTAAACTCCCGGAGCTTTCCCAATTTGAATTTGAAAAGATTGCTACTGCAACAAACAACTTTCACCTAAATAATAAGCTAGGGCAAGGTGGTTTTGGACCAGTATACAAGGGTACATTGGAAGATGGACAGGAAATAGCTGTTAAAAGACTTTCAAGAACATCTGGACAAGGGCTAGAAGAATTTATGAATGAGGTTTTGGTAATATCAAAGCTTCAACATCGTAACCTTGTCAGACTTCTTGGATGTTGCATTGAAGGAGATGAAAAGATTTTGATCTATGAGTACATGCCAAACAGAAGTTTGGATGCATATATGTTTGATCCATTTAAACAAGTACTGAATTGGGAAAAACGTTTTTATATAATTGAAGGAATTGCCCGGGGTCTACTTTACCTTCATAGAGACTCAAGACTCAGAATTATCCATAGGGACCTAAAGTTAAGTAATATATTGTTGGATGAAGAGCTGAATCCAAAAATATCAGACTTTGGTATGGCAAGGATTTTTGGTCACAGTGAAGATGAGGCCAATACTAGAAGGGTTGTTGGAACATATGGTTATTTGTCTCCGGAATATGCCATGGAAGGACTATTTTCAGAGAAGTCTGATGTCTTTAGCTTTGGTGTTTTACTGCTGGAGATTGTCAGCAGGAGGAAAAACACCAGCTTTTATAAGGATGCTGAAACTTTGAGTCTTTTAGGATTTGCATGGAAGTTGTGGAATGAGGACAACATCACATCTCTAATAGATCCAGAAATATCAAATCAAAGCTTCCATGCAGATATTATTAGATGCATACATATTGGCCTTCTGTGTGTGCAGGAACTTGCAAGAGACAGGCCTACAATGACTACAGTAATTTCAATGCTTAGCAATGAGACTGTTTACCTTCCCACCCCAAGACGGCCAGCATTCATTCAAAGGCAGACCATGTTGGATGTAGAGTGCTCTCCTAAAAATGATGTATTGTGCTCCATCAATTATGATGGAAATCTTGTTCTGATGAATGGACAAGAAGAGATCCTTTGGTCAACAAATGTGTCCAATGTTGCATCTAATGCAACGGCTCTGCTTCAAAATACTGGCAATCTTGTGTTGCAAGAAAGCACTACAGGAAGGATGGTGTGGCAAAGTTTCCAACACCCTTGTAATACATTGTTAGAGACAATGAAACTTAGTGCGAATAAAACTAGTGGTGAGCGAATGAAACTCACCTCATGGAGAAATACTCAGGATCCATCCATTGGAAACTTCTATTCACGCCTTGAACGCCTAGAAATTCCTGAAATTTTCACCTGGAGAGGAAACCAACCATACTGGCGAAGTGGTCCATGGAATGGTAATATCTTTCTTGGGACACCTAACATGAATAATAATTATCTTGATGGATTTTACTTAGGTGGGCAAGGTGAAGGGGATGAAAATTATTATCTCACTTTTACCTATGCAAAGCAGTCCCAGTTGATGATATATGTGTTGAACAGTCAAGGAGATATAGACGAATGGTTTTGGGATCATGCAAAGAGACATTGGTATATCCAGTGGTCAGTTCCAAAATCTGAGTGTGATGTTTATGGCATATGTGGAGTATTTGGAAGCTGTGATTCTAGAAGTTCTCCTATCTGCAGCTGTTTGAAAGGATATGAGCCAAGGGATCCAGAGGAATGGAATAGACAGAACTGGACCAGTGGATGTGTTAGGAAGGAACCTCTGCAGTGCAAGAGAGATGGATTTCTGAAGCTGCAGAACACCAAAGTTCCAGACTTTGTCCAATGGTCTTCTTCTCATTATGATGATTGTAGAATTGAGTGCTTGCACAACTGTTCTTGTTTAGCATATGCTTATGATGCAGGCATTGGTTGTATGTTTTGGAGTTCAAACTTAACTGACATACAGAGGTTCTCAACTGGAGGAACTGATCTTTACATTCGAGTTCCCTATTCAGAACTTGATGAAAAGAAAAAGAATGCCACAGTGATCATCGTAGTTGCAATCATAATAGGAACAATTCTCATGGTCATGTGTGGATGTGTCTTGTGGAAAAAAAAGAGAAAAAATCTAAAAAATCAGAACAGAATCCAAGTAAATGATCTGAGTAAATTTCAACTGCCTGAGCTTTCCCACTTTGAGTTTGAAAAGCTTGTTATTGCAACAAACAACTTCCACTCAGATAATAAGTTAGGACAAGGTGGTTTTGGACCTGTATATAAGGGTACATTGGAAGATGGACAGGAAATAGCAGTTAAAAGACTTTCAAGAACATCTGGACAAGGGCTAGAAGAATTTATGAATGAGGTTGTGGTAATATCAAAGCTTCAACATCGTAACCTTGTCAGACTTCTTGGATGTTGCATTGAAGGAGATGAAAAGATTTTGATCTATGAGTACATGCCAAACAGAAGTTTGGATGCACATATGTTTGATCCATCTGAGCAAGTACTAAATTGGGAAAAACGTTTTAATATAATTGAAGGAATTGCTCGGGGTCTACTTTACCTTCATAAAGACTCTAGACTAAGAATTATCCATAGAGACCTTAAGTTAAGTAATATATTGCTGGATGGAGAGCTTAGCCCAAAAATATCAGATTTTGGTATGGCAAGAATTTTTGGTTACAGTGAAGATGAGGCCAATACTAGAAGGATTGTTGGAACGTATGGTTATATGTCTCCAGAATATGCCATGGAAGGGCTATTTTCAGAGAAGTCTGATGTCTTTAGCTTTGGTGTTTTACTGCTGGAAATTATCAGCAGGAGAAAAAATACCAGCTTTTATGAGGATGCTGAATCTTTGAGCCTTTTAGGATTTGCATGGAAATTGTGGAATGATAACAACATTACATCTCTAATAGATCCAGAAATGTCAGATCCAAGCTTTCATGCAGATATTATTATTAGATGCATACATATTGGTCTTTTGTGTGTACAAGAACTTGCAAGAGACAGGCCTACGATGACTTCAGTAATTTGGATGCTTAGCAATGAGACTGTTAATCTTCCTTCCCCAACGCAGCCAGGATTTGTTCAAAGACAGACCATGTTACATGCAGAGTGCTCTCGTAGAAATGATGGATTGGGCTCCATCAATTATGTGAGTGTAACAAGTATCCATGGAAGATAG 4248 0.3896 MNGQKEILWSTNVSNISSNTTALLLDTGNLVLQESATGKMVWQSFQHPCNTLLDKMKLVSNKTRMKITSWKSPQDPSIGNFSLSLEHLEIPEVFTWRGSQLYWRSGPWNGQIFLGTPDMSNNYLDGFYLGGKGEGDDNYYLTYTSANQSQLIMFVLSTEGGIDQLYWDYERRHWSIMWSVPKSECDVYGICGAFGSCDSTSSPICSCLQGFEPRNPEEWKRQNWTSGCVRKEPLQCERVKNGSEAQADNRDGFLKLQNTKVPDFVQWSSSLYDDCRTQCLQNCSCLAYAYDAGIGCMLWSGDLIDIQRFSAGGTDLYIRVPYSELDEKKKSATVIIAVTVTIGTIIILTCGYVLWKKKINLKIQSHRSQVNDPSKFKLPELSQFEFEKIATATNNFHLNNKLGQGGFGPVYKGTLEDGQEIAVKRLSRTSGQGLEEFMNEVLVISKLQHRNLVRLLGCCIEGDEKILIYEYMPNRSLDAYMFDPFKQVLNWEKRFYIIEGIARGLLYLHRDSRLRIIHRDLKLSNILLDEELNPKISDFGMARIFGHSEDEANTRRVVGTYGYLSPEYAMEGLFSEKSDVFSFGVLLLEIVSRRKNTSFYKDAETLSLLGFAWKLWNEDNITSLIDPEISNQSFHADIIRCIHIGLLCVQELARDRPTMTTVISMLSNETVYLPTPRRPAFIQRQTMLDVECSPKNDVLCSINYDGNLVLMNGQEEILWSTNVSNVASNATALLQNTGNLVLQESTTGRMVWQSFQHPCNTLLETMKLSANKTSGERMKLTSWRNTQDPSIGNFYSRLERLEIPEIFTWRGNQPYWRSGPWNGNIFLGTPNMNNNYLDGFYLGGQGEGDENYYLTFTYAKQSQLMIYVLNSQGDIDEWFWDHAKRHWYIQWSVPKSECDVYGICGVFGSCDSRSSPICSCLKGYEPRDPEEWNRQNWTSGCVRKEPLQCKRDGFLKLQNTKVPDFVQWSSSHYDDCRIECLHNCSCLAYAYDAGIGCMFWSSNLTDIQRFSTGGTDLYIRVPYSELDEKKKNATVIIVVAIIIGTILMVMCGCVLWKKKRKNLKNQNRIQVNDLSKFQLPELSHFEFEKLVIATNNFHSDNKLGQGGFGPVYKGTLEDGQEIAVKRLSRTSGQGLEEFMNEVVVISKLQHRNLVRLLGCCIEGDEKILIYEYMPNRSLDAHMFDPSEQVLNWEKRFNIIEGIARGLLYLHKDSRLRIIHRDLKLSNILLDGELSPKISDFGMARIFGYSEDEANTRRIVGTYGYMSPEYAMEGLFSEKSDVFSFGVLLLEIISRRKNTSFYEDAESLSLLGFAWKLWNDNNITSLIDPEMSDPSFHADIIIRCIHIGLLCVQELARDRPTMTSVIWMLSNETVNLPSPTQPGFVQRQTMLHAECSRRNDGLGSINYVSVTSIHGR. 1416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05193 1415 ProSiteProfiles EGF-like domain profile. 181 217 IPR000742 -
Seca5g05193 1415 Gene3D Phosphorylase Kinase; domain 1 1056 1172 - -
Seca5g05193 1415 Gene3D Phosphorylase Kinase; domain 1 356 471 - -
Seca5g05193 1415 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 698 1358 - -
Seca5g05193 1415 Pfam Protein tyrosine and serine/threonine kinase 397 665 IPR001245 GO:0004672|GO:0006468
Seca5g05193 1415 Pfam Protein tyrosine and serine/threonine kinase 1099 1365 IPR001245 GO:0004672|GO:0006468
Seca5g05193 1415 ProSiteProfiles Bulb-type lectin domain profile. 644 755 IPR001480 -
Seca5g05193 1415 SUPERFAMILY Protein kinase-like (PK-like) 379 666 IPR011009 -
Seca5g05193 1415 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 360 471 - -
Seca5g05193 1415 CDD PAN_AP_plant 946 1022 - -
Seca5g05193 1415 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1173 1376 - -
Seca5g05193 1415 SUPERFAMILY Protein kinase-like (PK-like) 1079 1368 IPR011009 -
Seca5g05193 1415 Pfam S-locus glycoprotein domain 103 214 IPR000858 GO:0048544
Seca5g05193 1415 Pfam S-locus glycoprotein domain 816 927 IPR000858 GO:0048544
Seca5g05193 1415 ProSiteProfiles Bulb-type lectin domain profile. 1 45 IPR001480 -
Seca5g05193 1415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1217 1229 IPR008271 GO:0004672|GO:0006468
Seca5g05193 1415 CDD PAN_AP_plant 233 321 - -
Seca5g05193 1415 Pfam D-mannose binding lectin 699 784 IPR001480 -
Seca5g05193 1415 Pfam D-mannose binding lectin 2 71 IPR001480 -
Seca5g05193 1415 ProSiteProfiles PAN/Apple domain profile. 949 1022 IPR003609 -
Seca5g05193 1415 SMART ntp_6 949 1021 IPR003609 -
Seca5g05193 1415 SMART ntp_6 248 320 IPR003609 -
Seca5g05193 1415 ProSiteProfiles Protein kinase domain profile. 396 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05193 1415 ProSiteProfiles Protein kinase domain profile. 1097 1373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05193 1415 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1057 1172 - -
Seca5g05193 1415 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 472 674 - -
Seca5g05193 1415 Pfam PAN-like domain 248 306 IPR003609 -
Seca5g05193 1415 Pfam PAN-like domain 949 1007 IPR003609 -
Seca5g05193 1415 CDD STKc_IRAK 1103 1368 - -
Seca5g05193 1415 SUPERFAMILY alpha-D-mannose-specific plant lectins 698 822 IPR036426 -
Seca5g05193 1415 SMART serkin_6 1097 1361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05193 1415 SMART serkin_6 396 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05193 1415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Seca5g05193 1415 CDD STKc_IRAK 402 666 - -
Seca5g05193 1415 Gene3D - 669 756 IPR036426 -
Seca5g05193 1415 Gene3D - 1 46 IPR036426 -
Seca5g05193 1415 Gene3D Transferase(Phosphotransferase) domain 1 1173 1377 - -
Seca5g05193 1415 Gene3D Transferase(Phosphotransferase) domain 1 472 668 - -
Seca5g05193 1415 ProSiteProfiles EGF-like domain profile. 894 930 IPR000742 -
Seca5g05193 1415 ProSiteProfiles PAN/Apple domain profile. 236 321 IPR003609 -
Seca5g05193 1415 SUPERFAMILY alpha-D-mannose-specific plant lectins 4 109 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05193 Seca-Chr5 109082802 109094693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05193 331 681 Receptor kinase-like Gene Family AT4G23230 52.975 1.22e-118 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g05193 PK_Tyr_Ser-Thr 8.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05193 - - gab:108462278 1464.13