Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05192 ATGAAAGTGCCAGACTTTGCAGAAAGGTCAGCTTCTTTGGAAAGTGAATGCAGAGCTCAGTGCTTGGAGAATTGCTCTTGCTTGGCATATGCATATGAGAGTGGTGTTGGATGTATGGTTTGGAGCGGAGACTTGATAGACATGCAAACATTCTCAAGTGGAGGGGTTGATCTTTACATTCGTGTGGCACCTTCAGAACTCGAAACACATTCAGATAAAAGAAGAGACAAGAGAATAATCATTGCAGTTGCAGTAACTATAGGAGTGATTACCTTAGCTGGCTGTGCTTATCTCTCATGGAAATGGACTACTAAACCTACAGTCAATACAGGAAAATTAATTTCACGAAGACAAAGAATGAAGCTGGAAACCCAGCAGAGACAAAAAAAACTGGACGATCAACAACCGCTTTTTAAATTTGAAGAGCTTGCAACTGCCACAGACAATTTTCACTTAGCTAACGTGCTTGGAAAAGGTGGTTTTGGTTTAGTATATAAGGGACAATTGAAAGATGGACAGGAAATAGCAGTGAAAAGACTTTCCAAAACATCTGGACAAGGGTTAGAAGAATGTATGAATGAGGTATTAGTGATTTCAAAGCTTCAACATCGCAATCTTGTGAGACTTCTTGGATGTTGTATTGAACAGGAGGAAAGGATGTTGATCTATGAGTACATGCCTAACAAGAGTTTGGATGTACTATTGTTTGATCCGGTAAAAAAGAAGGATCTAGATTGGCCAAAACGCTTCAATATAATTGAAGGAATCTCTCGAGGTTTGCTTTACCTCCACAGAGATTCTAGACTGAAAATTATACATCGAGATTTAAAGGTTAGTAACATCTTGTTGGATAAAGAGATGAATCCAAAAATATCTGACTTTGGTATGGCCAAAATATTTGGAGGCAATGATATACAAGCTAGTACTAGCAGAGTTGTTGGAACATTTGGCTATATGCCTCCAGAGTATGCATTGCGAGGGTTGTTTTCTGAGAAGTCAGATGTGTTTAGCTTTGGAGTGTTGGTACTAGAGATTATTAGTGGCAAAAAAATCAGTAGCTATTATGACCATGACCTATCATTGAGCCTCTTAGGATTTGCATGGAAATTATGGAATGAAAATGACATGCAATCCCTGATAGACCAAGAAATATGTAATCGAGATCCAGATTATATGAAAGAGATTTATAGATGCATACACATTGGACTTCTTTGTGTACAAGAATTTGCAAAAGAGAGGCCTAGTATGGGTACAGTAGTTTCAATGCTCAATAGTGAGATTGTGAATCTGCCACTCCCATCACGTCCCGCATTCAGCGAAAGGCAAATTTTATCGAGTGCAGAATCATCTTCTTCTCATCAGCACAGAACACACTCCATCAACAATGTTACTGTCACAGACATACAAGGTTTGAGCTCTGCTACTGCCAGGGATACCATTACATTGTCTCAATTCATCAGAGACTCAGAGACAGTAAACTCAAGTGACAGTGTCTTCAAGCTTGGATTTTTCAGCCCTACAAATTCAACAAACCGTTACTTAGGAATCTGGTATCTCTCTGACTCCAACGTCATATGGCTTTTACGTTCTGGAAATCTGGTGCTGTTAGATGGAACCAGTGGACAGACCATATGGGAGAGTTTCAAACATCCTTGTGATGCAGCAGTGCCAACTATGAGAATCAGTGCTAACAGAGTCACGGGTCAGAAAATAAGGTTTATATCAAGGAAAAGTGATTCTGATCCTTCTACTGGGTACTTCTCTGCTAGTCTTGAACGTCTGGATGCACCAGAAGTGTTTTTCTGGATCAATGGAACTCGCCCATATTGGAGGACTGGTCCATGGAATGGTCGAATCTTTATTGGGACACCACTGATGTCAACTGGGTATCTATATGGATGGAATGTGGGATATGAAGGGAATGAAACTGTTTATCTAACTTACAGTTTTGCTGACCAATCTGCATTTGGAATCCTTACCTTGAATCCACAAGGTAAGCTTAAATTGGTAAGATATTATAACAGAAAGCAAGTGTTGGATGTGGTGTTGGAGAATTCTGTTTGTGATGTTTATGGCACATGTGGGGCATATGGAAGCTGTGATGTGCAGAGCTCACCAATCTGTACCTGTTTGAGAGGGTATGAACCCAGGAATCCAGAGGAGTGGAATAGGCAAAATTGGACTAGTGGGTGTGTGAGGAAGGAACCACTCAAGTGTGAGAGGTTGAAAAATTGTGAGAGGGTGAAAAATGGAAGTGAAGCTGGTGAAGGAGATGGATTTTTGAAACTGCAGATGACAAAAGTACCAGACTTTGCACAACAGTCATATCTTTCAGTTGATGCGTGTAGAACTGAGTGCCTCAAGAATTGTTCTTGTACAGCTTATGCATATGATGGTGGCATTGGCTGTTTGAGTTGGAGTGGGAAGTTAATTGACATAGTGAGGTTCTCAAGTGGAGGAGTTGATCTTTACATACGCCAACCTTATTCAGAATTACTTGATGTAGATGGGAAAAGAAACGTTACAGCAATCATCATAGTTTCAGTGACAGTTGGAGCAGTTATTGTTGCTACCTGTACATATTTCTTATGGTCATGGACTTCTAAACATACAGGGGAAACACATATGGAAAACCGAAGTGTTGGTCTAATTGGAGATGTGAAACAAGTCAAAATCGAGGACCTTCCTTTATTTGATTTTAGAATCATTGCAACTTCAACAAATAACTTTGATTCAGCTAATAAGCTTGGCCAGGGTGGTTTCGGTTCAGTATATAAGGGAGAATTGCAAGATGGACAAGAAGTAGCAGTGAAAAGACTTTCAAGAGCTTCTGGACAGGGGATAGAAGAATTTATGAATGAAGTGATTGTGATTTCAAAGCTTCAACACCGCAATCTTGTGAGACTTCTAGGCTGCTGCATCGAAGGGGAAGAAAAGATGTTGATCTATGAGTACATGCCTAATAACAGCTTAGATTTTTATCTATTTGACCAAGTCAAAAAGAAGGTTTTAGATTGGCAAAAACGGTTAAACATAATTGAAGGAATCTCTAGAGGTCTTCTTTATCTCCATAGAGATTCCAGATTAAGAATAATACATAGAGACCTGAAGCCAAGTAATATCTTGCTGGATGGAGAACTGAATCCAAAAATATCTGACTTTGGTATGGCAAGAATCTTTGGGGGCAGTGAAAATGAGGCCAACACTAGAAGAATTGTGGGAACATATGGGTACATGTCCCCTGAATATGCCATGGAAGGGCTGTTTTCAGAGAAATCAGATGTTTTTAGCTTTGGAGTTTTGCTTCTGGAGATAATTAGTGGTAGGAAAAACACAAGTTTCTATAAACACGAGCAGTCACTGAGCCTCTTAGGATATGCATGGAAACTATGGAATGAAGAGGAGATTGTATCTTTGATAGATCCAGATGTATCTAATCCGGATTATGTCGATCATATTTTGAGATGCATACACATTGGACTTCTATGTGTGCAAGAATTTGCAAAGGAGAGGCCTACTATGGCCACCGTTGTTTCAATGCTTAATAGTGAGATTGTTAATTTTCCTGCTCCAAGGCAACCCGCATTCACTCAAAGACAGATTGAGCAGAGCGGAGATTCATCTCAACAGAGTCATGATTCAAATTCCATCAACAATGTTACTGTCACAAACTTGCAAGGCAGATAG 3687 0.3976 MKVPDFAERSASLESECRAQCLENCSCLAYAYESGVGCMVWSGDLIDMQTFSSGGVDLYIRVAPSELETHSDKRRDKRIIIAVAVTIGVITLAGCAYLSWKWTTKPTVNTGKLISRRQRMKLETQQRQKKLDDQQPLFKFEELATATDNFHLANVLGKGGFGLVYKGQLKDGQEIAVKRLSKTSGQGLEECMNEVLVISKLQHRNLVRLLGCCIEQEERMLIYEYMPNKSLDVLLFDPVKKKDLDWPKRFNIIEGISRGLLYLHRDSRLKIIHRDLKVSNILLDKEMNPKISDFGMAKIFGGNDIQASTSRVVGTFGYMPPEYALRGLFSEKSDVFSFGVLVLEIISGKKISSYYDHDLSLSLLGFAWKLWNENDMQSLIDQEICNRDPDYMKEIYRCIHIGLLCVQEFAKERPSMGTVVSMLNSEIVNLPLPSRPAFSERQILSSAESSSSHQHRTHSINNVTVTDIQGLSSATARDTITLSQFIRDSETVNSSDSVFKLGFFSPTNSTNRYLGIWYLSDSNVIWLLRSGNLVLLDGTSGQTIWESFKHPCDAAVPTMRISANRVTGQKIRFISRKSDSDPSTGYFSASLERLDAPEVFFWINGTRPYWRTGPWNGRIFIGTPLMSTGYLYGWNVGYEGNETVYLTYSFADQSAFGILTLNPQGKLKLVRYYNRKQVLDVVLENSVCDVYGTCGAYGSCDVQSSPICTCLRGYEPRNPEEWNRQNWTSGCVRKEPLKCERLKNCERVKNGSEAGEGDGFLKLQMTKVPDFAQQSYLSVDACRTECLKNCSCTAYAYDGGIGCLSWSGKLIDIVRFSSGGVDLYIRQPYSELLDVDGKRNVTAIIIVSVTVGAVIVATCTYFLWSWTSKHTGETHMENRSVGLIGDVKQVKIEDLPLFDFRIIATSTNNFDSANKLGQGGFGSVYKGELQDGQEVAVKRLSRASGQGIEEFMNEVIVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNNSLDFYLFDQVKKKVLDWQKRLNIIEGISRGLLYLHRDSRLRIIHRDLKPSNILLDGELNPKISDFGMARIFGGSENEANTRRIVGTYGYMSPEYAMEGLFSEKSDVFSFGVLLLEIISGRKNTSFYKHEQSLSLLGYAWKLWNEEEIVSLIDPDVSNPDYVDHILRCIHIGLLCVQEFAKERPTMATVVSMLNSEIVNFPAPRQPAFTQRQIEQSGDSSQQSHDSNSINNVTVTNLQGR. 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05192 1228 CDD STKc_IRAK 156 424 - -
Seca5g05192 1228 ProSiteProfiles Protein kinase domain profile. 150 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05192 1228 Pfam S-locus glycoprotein domain 610 717 IPR000858 GO:0048544
Seca5g05192 1228 ProSitePatterns Protein kinases ATP-binding region signature. 156 178 IPR017441 GO:0005524
Seca5g05192 1228 ProSitePatterns Protein kinases ATP-binding region signature. 916 938 IPR017441 GO:0005524
Seca5g05192 1228 SMART serkin_6 150 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05192 1228 SMART serkin_6 910 1186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05192 1228 Gene3D Transferase(Phosphotransferase) domain 1 986 1189 - -
Seca5g05192 1228 Gene3D Transferase(Phosphotransferase) domain 1 226 429 - -
Seca5g05192 1228 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 226 431 - -
Seca5g05192 1228 CDD STKc_IRAK 916 1182 - -
Seca5g05192 1228 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 986 1189 - -
Seca5g05192 1228 FunFam receptor-like serine/threonine-protein kinase SD1-8 885 985 - -
Seca5g05192 1228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Seca5g05192 1228 MobiDBLite consensus disorder prediction 1196 1228 - -
Seca5g05192 1228 SUPERFAMILY alpha-D-mannose-specific plant lectins 520 617 IPR036426 -
Seca5g05192 1228 ProSiteProfiles Protein kinase domain profile. 910 1196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05192 1228 CDD PAN_AP_plant 1 63 - -
Seca5g05192 1228 Pfam D-mannose binding lectin 522 577 IPR001480 -
Seca5g05192 1228 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 115 225 - -
Seca5g05192 1228 Pfam PAN-like domain 756 813 IPR003609 -
Seca5g05192 1228 Pfam PAN-like domain 1 48 IPR003609 -
Seca5g05192 1228 Pfam Protein tyrosine and serine/threonine kinase 913 1181 IPR001245 GO:0004672|GO:0006468
Seca5g05192 1228 Pfam Protein tyrosine and serine/threonine kinase 151 423 IPR001245 GO:0004672|GO:0006468
Seca5g05192 1228 ProSiteProfiles EGF-like domain profile. 684 720 IPR000742 -
Seca5g05192 1228 SUPERFAMILY Protein kinase-like (PK-like) 133 443 IPR011009 -
Seca5g05192 1228 Gene3D Phosphorylase Kinase; domain 1 885 985 - -
Seca5g05192 1228 SUPERFAMILY Protein kinase-like (PK-like) 895 1212 IPR011009 -
Seca5g05192 1228 Gene3D - 472 592 IPR036426 -
Seca5g05192 1228 Gene3D Phosphorylase Kinase; domain 1 110 225 - -
Seca5g05192 1228 CDD PAN_AP_plant 750 826 - -
Seca5g05192 1228 SMART ntp_6 1 62 IPR003609 -
Seca5g05192 1228 SMART ntp_6 755 827 IPR003609 -
Seca5g05192 1228 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 518 1206 - -
Seca5g05192 1228 ProSiteProfiles PAN/Apple domain profile. 1 63 IPR003609 -
Seca5g05192 1228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1031 1043 IPR008271 GO:0004672|GO:0006468
Seca5g05192 1228 ProSiteProfiles PAN/Apple domain profile. 745 828 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05192 Seca-Chr5 109060747 109082490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05192 62 459 Receptor kinase-like Gene Family AT4G05200 49.630 6.13e-117 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g05192 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05192 - - mtr:11424236 1510.35