Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05187 ATGAAGAAGTGTGAGCTCTGCAACAGTCCCGCAAAGTTGTTCTGTGATTCAGATCAAGCTAGTCTTTGTTGGGAATGCGATGCTAAGGTTCACACTGCAAATTTCCTCGTCACCAAGCATCCTAGGATTCTCCTCTGCCATGTTTGTCAATCGCTAACGGCTTGGCATGGCACTGGACCAAAGTTTGTACCAACCATCTCCGTTTGCAACAATTGTGTTAGTAACAACAATAACAGTACCTGCAACCAACAGAATCATGATGATGATGACGATGATGACGATGGTGGTGATGATGATGGCGAGGATGGTGTAGAAAACGATGATGATACGGATGAGGACGAAGATGACGAAGAAAATCAAGTGGTTCCATGGACATCGCCACAACCGGTTTCGAATTCTTCAAGTAGTGCAACTAGTTCTACCTGCAGATTCTCTAATGGTGAAGAAGGTGGCTCAGACTAA 462 0.4481 MKKCELCNSPAKLFCDSDQASLCWECDAKVHTANFLVTKHPRILLCHVCQSLTAWHGTGPKFVPTISVCNNCVSNNNNSTCNQQNHDDDDDDDDGGDDDGEDGVENDDDTDEDEDDEENQVVPWTSPQPVSNSSSSATSSTCRFSNGEEGGSD. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05187 153 CDD Bbox1_BBX-like 3 45 - -
Seca5g05187 153 MobiDBLite consensus disorder prediction 79 153 - -
Seca5g05187 153 MobiDBLite consensus disorder prediction 86 120 - -
Seca5g05187 153 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Seca5g05187 153 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 144 - -
Seca5g05187 153 SMART bboxneu5 1 45 IPR000315 GO:0008270
Seca5g05187 153 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Seca5g05187 153 MobiDBLite consensus disorder prediction 121 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05187 Seca-Chr5 109042389 109042850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05187 2 130 C2C2-CO-like Transcription Factor Family AT5G54470 46.565 8.54e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca5g05187 zf-B_box 3.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05187 - - gmx:100306080 185.267