Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05183 ATGGATTTTGATCTTGAAGACCCACTAGCCAGCTTCAAGGAACAGCAAACCTGTACTATATCTCAACTCTTTGCCTCGGAATCTGATCACATGCCCTCACCAAACTCCTTAAGTTCAACACATTTTCATGACTCCTTCCGTTGTGAAACCATTTCTCTCATACTTCAGGTCCAGCTTTCTTGCAATTTGGACCCGTTTGTAGCTTATCTTGCCATAAATTACTTGCACCGTTTCATGTCAAGGCAAGAAATTCCGGCCATTAGTCCTGTGAGTTTGCAGCAGGGGAAGCCGTGGTTACTCAGGCTCGTTGGTATATCCTGTCTTTCTCTCGCTTCAAAGATGAAGAACACACCTTTACCATTTACCATTATGCAGAAAGAAGGTTGCAACTTTGATGCTCAAAGTATTGAGAGAATGGAACTCGTTATTCTGGGGGCTCTGAATTGGCGTATGAGGTCAATTACACCTTTTCCCTTCTTGCATTTCTTCACCTCTTTAGCTGAAATCAAAGACCAACCACTGAAGCAAGCACTTAAAGATCGAGCTTCAGAGATAATCTTCAATGCTCATAATGATATTAAGCTTTTAGAGTATAAACCTTCAACTATTGCAGCAACTGCCCTTATATGTGCATCTCATGAACTATTCCCGCAGCAATATTCTAATATTAGAGCTTCAATCACAGCTTGTGTGTATGTAAACGAGGAGACATTGTCCAAGTGCTTTGATTTGATGAAAGAGATGGTGAGAATGGAAGGAAAGGAGTTAATGATAGATTCAAATACAAGCTTCTTAAGCACTGAAACTCCAGTGAGTGTGCTGGAGAGAAGCACCAAGCGTCAGAGAATTTGA 852 0.412 MDFDLEDPLASFKEQQTCTISQLFASESDHMPSPNSLSSTHFHDSFRCETISLILQVQLSCNLDPFVAYLAINYLHRFMSRQEIPAISPVSLQQGKPWLLRLVGISCLSLASKMKNTPLPFTIMQKEGCNFDAQSIERMELVILGALNWRMRSITPFPFLHFFTSLAEIKDQPLKQALKDRASEIIFNAHNDIKLLEYKPSTIAATALICASHELFPQQYSNIRASITACVYVNEETLSKCFDLMKEMVRMEGKELMIDSNTSFLSTETPVSVLERSTKRQRI. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05183 283 FunFam D6-type cyclin 32 149 - -
Seca5g05183 283 Pfam Cyclin, C-terminal domain 154 250 IPR004367 -
Seca5g05183 283 SUPERFAMILY Cyclin-like 19 151 IPR036915 -
Seca5g05183 283 Pfam Cyclin, N-terminal domain 22 151 IPR006671 -
Seca5g05183 283 Gene3D - 22 243 - -
Seca5g05183 283 FunFam D6-type cyclin 150 243 - -
Seca5g05183 283 SMART Cyclin_C_2 154 283 IPR004367 -
Seca5g05183 283 PANTHER CYCLINS 41 250 IPR039361 -
Seca5g05183 283 CDD CYCLIN_AtCycD-like_rpt2 154 245 - -
Seca5g05183 283 SMART cyclin_7 52 145 IPR013763 -
Seca5g05183 283 Gene3D - 33 152 - -
Seca5g05183 283 SUPERFAMILY Cyclin-like 136 250 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05183 Seca-Chr5 109019114 109021460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05183 1 276 Core Cell Cycle Gene Families AT4G03270 41.034 2.35e-60 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05183 K18812 - gmx:100799985 422.165