Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05177 ATGGGAAGAAAATCAACCACGCAGGAGGAGGAAGAAGAAGAACTGCCGGACGATCTCCGGTGCAACCGTACCGACGGGCGGAAATGGCGGTGCCGGCGGAGAGCGATGGAAGACGTGAAGGTGTGCGAGATTCACTATCTGCAAGGTCGACATCGGCAGAACAAGGTGAAGGTCCCTGAGTCACTGAAGCTTCAGAGAAAGAGGAAGGAGATGAAAAACGACGTCGTTGAGATTAGGGCGAAGAGAAAGAAGAAGAAGCAGAAGCAGAAGCAAGGTGATATTCAATTGGAGCTGATAAGAATGGTTCTTCAAAGAGAGGTAGAGAAGAACAAGAAGAAAAGGATGAACATGAACATGAAGGAGGAACGGCATTACAGTGAGGGAGAGTTGAGGAGAGAATTGCCCAATGGGGTTATGGAAATTGCCCCTGCTTCAACGCCTCATGATTACACCAATGTGGGTTCTCAGTGTGATGTTCAAGCACTTACACCACGTTACTTCAGGTCCAAGAATGTTGACAGGGTCCCTGTTGGCAAGTTGCAGGTTGTGCCTTATGGACGAAACTTGAAGAAGGGAAGGAGGAGGAAGTGCCATTGGTGCCAGAGAAGTGATTCTTTTAATCTTATAAAGTGTTCTAACTGCCAGAAACAGTTTTTCTGCATGGATTGCATTAAAGAACGGTGGGGACTTGTTAGGTATTTTGAGACTCAAAATGAGGTTAAGATGGCTTGTCCAGTTTGTCGAGGAACTTGCACCTGTAAAGATTGTCTGACAAGTCAATACAAAGACTCTGAAAGTAAGGAATATTTGGCTAGTACAAGCAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGCATGCTCCTTCCTGTACTAAAAGAAATAAGTAAAGACCAACATACAGCCCTAGATACAGAAGCGAAAATTAAAGGGAAAAGAATTTCTGATATTCTCATCAAGCAGGTTGAGTTTGGCTGCAATGAGAAAATTTACTGCAATTACTGCAGAACACCCATTTTGGATCTTCATAGAAGCTGCCTTAGTTGTTCCTACAGCCTTTGCTTAAGTTGTTGTCAGGCATTAAGCCAAGGAAGCGCCTCTGAAGAAATTAACTCTTCTATGTCCAAGCTACCTGACAAAAAGAACAATTGCATTGCTGGTGAAAGCCACCTTTTGGATGATAAGGCCATTTCTAGTGGCAATATAACTGATACTCCAATGTTACCTGAGTGGACAAGTTGTAACAGTACTGACAGAGTATCATGCCCTCCTACGAAACTAGGTGGTTGTGGTGATAGCCACCTTGATTTGAGATGTATTTTTCCCTTAAGTTGGATCGAAGAAATGGAAGTGAAGGCAGAAGAAATAGTTTGCAGCTATGACTTCCCTGAAACTTTGGATAAAAGATCAAGTTGTTCACTGTGTATTGACAAAGATCATAAAAGTAACAGATATAAGCAATCACAAGAAGCAGCTCGAAGGGAAGATTCTAATGATAATTACTTATTTTATCCTACAGTTTTGGATATCAGTAGTGATCATTTTGAACACTTTCAGAAACACTGGGGAAAAGGCCATCCTGTAGTAGTGCAAGATGTGCTCCAAAGTACGCCAAACCTCAGTTGGGACCCACTGGTCATGTTCTGTGCTTATCTCGAGAGGAGCATTACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTGTGAGGTTGAAATTAACATTAGGCAGCATTTTACCGGGTCTCTCAAATGTCAACCTCAGAAAAATACTTGGCATGAGATGCTGAAACTAAAAGGATGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAAGTAATTGATGCTCTTCCAATTCAAGAATACATGAATCCCATGTCTGGTTTTCTGAATTTAGCTGCAAATTTGCCACAGGGAAGTGCAAAAGATGACCTAGGACCATATGTATATATTTCATATGGCTGCGCCAACAAAGAAGCTTATTCGGTGAAAAATCTCTGTTATGACTCATATGATATGGTTAATATCATGGCACATACCACAGATGTCCCTCTTTCTACAGAACAGCTTTCTAAAATACGTAGGTTACTGAAAAAGCACAGAGCTCTCTGTCAAAGGGCGTCTTCTAAACCTATTACTGAGCATGCTGAAGACAGGGAACAAAAGGAACTGCAGAGTATAGTGAGAGAAGGAACCGACTTTTTCAGGAGAGTCAATAGAACATCTTGCATTGAAGCCAGAACAACAGCTAGTCAGAGTTTAGAAACCAATACTTCCGGCAATGGAGAATGTGGTTCTGATTCTGATACTGAAAAGGCACAAACCTCTTTACCTTTACACAGGACAGTTGAAAGTACTGAAATGTCTCCAGTTCATAATCCTAAAGATCCATTCAAAAACTCAAACAGTGATAAAAGGAAGAAGTTTACTGAGAATTCTGGCGCCCAGTGGGATGTCTTCCGAAGACAGGATGTACCAAAGCTCCTAGAATACCTTAAAAGACACTCTGATAAATTTTCTCGAACTAGTGAATGTCATGAGAAGATGGTTCATCCAATTCTAGATCAGTGCTTCTTTCTCGACAATACACATAAAATGAGACTTAAGGAGGAGTTTAAAATTGAACCCTGGACTTTTGAGCAACATGCTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATTAGGATTCCTAAGTGCTGTGTTCATGTGGTGTTGGAATTTGTGTCCCCTGAGAATGTTACTGAGTGTATCCAATTGATTGATGAGGTCCGTCTTCTTCCAAAAGACCATAAATCAAAAGTGGACAAGCTGGAGGTGAAGAAAATGGCCCTTTATAGCATGAGTACAGCAATAAAAGAAATACGTGAGCTTACATCCAAGACATGA 2925 0.413 MGRKSTTQEEEEEELPDDLRCNRTDGRKWRCRRRAMEDVKVCEIHYLQGRHRQNKVKVPESLKLQRKRKEMKNDVVEIRAKRKKKKQKQKQGDIQLELIRMVLQREVEKNKKKRMNMNMKEERHYSEGELRRELPNGVMEIAPASTPHDYTNVGSQCDVQALTPRYFRSKNVDRVPVGKLQVVPYGRNLKKGRRRKCHWCQRSDSFNLIKCSNCQKQFFCMDCIKERWGLVRYFETQNEVKMACPVCRGTCTCKDCLTSQYKDSESKEYLASTSRVDRILHFHYLVCMLLPVLKEISKDQHTALDTEAKIKGKRISDILIKQVEFGCNEKIYCNYCRTPILDLHRSCLSCSYSLCLSCCQALSQGSASEEINSSMSKLPDKKNNCIAGESHLLDDKAISSGNITDTPMLPEWTSCNSTDRVSCPPTKLGGCGDSHLDLRCIFPLSWIEEMEVKAEEIVCSYDFPETLDKRSSCSLCIDKDHKSNRYKQSQEAARREDSNDNYLFYPTVLDISSDHFEHFQKHWGKGHPVVVQDVLQSTPNLSWDPLVMFCAYLERSITRYENNKDLLEACLDWCEVEINIRQHFTGSLKCQPQKNTWHEMLKLKGWLSSQLFKEQFPAHFAEVIDALPIQEYMNPMSGFLNLAANLPQGSAKDDLGPYVYISYGCANKEAYSVKNLCYDSYDMVNIMAHTTDVPLSTEQLSKIRRLLKKHRALCQRASSKPITEHAEDREQKELQSIVREGTDFFRRVNRTSCIEARTTASQSLETNTSGNGECGSDSDTEKAQTSLPLHRTVESTEMSPVHNPKDPFKNSNSDKRKKFTENSGAQWDVFRRQDVPKLLEYLKRHSDKFSRTSECHEKMVHPILDQCFFLDNTHKMRLKEEFKIEPWTFEQHAGEAVIIPAGCPYQIRIPKCCVHVVLEFVSPENVTECIQLIDEVRLLPKDHKSKVDKLEVKKMALYSMSTAIKEIRELTSKT. 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05177 974 ProSiteProfiles JmjC domain profile. 635 937 IPR003347 -
Seca5g05177 974 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Seca5g05177 974 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 973 IPR045109 GO:0032454|GO:0033169
Seca5g05177 974 Pfam WRC 16 57 IPR014977 -
Seca5g05177 974 SUPERFAMILY Clavaminate synthase-like 515 958 - -
Seca5g05177 974 ProSiteProfiles Zinc finger RING-type profile. 197 248 IPR001841 -
Seca5g05177 974 Pfam JmjC domain, hydroxylase 824 917 IPR003347 -
Seca5g05177 974 Coils Coil 61 88 - -
Seca5g05177 974 SMART cupin_9 616 937 IPR003347 -
Seca5g05177 974 Gene3D Cupin 507 946 - -
Seca5g05177 974 MobiDBLite consensus disorder prediction 758 820 - -
Seca5g05177 974 MobiDBLite consensus disorder prediction 758 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05177 Seca-Chr5 108970834 108976615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05177 16 55 GRF Transcription Factor Family AT2G22840 57.500 6.03e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca5g05177 JmjC 2.5e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05177 K15601 - gmx:100802129 1443.33