Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05174 ATGGGGAGAACACCTTGTTGTGACAAAAATGGCCTCAAGAAAGGTCCATGGACAACCGAAGAGGATCAGAAACTCATTGATTACATTCAGAAACATGGATATGGCAACTGGAGAACACTCCCAAAGAATGCTGGGTTGCAAAGATGTGGAAAGAGTTGTCGTCTCCGGTGGACAAACTATCTCCGACCAGACATAAAACGAGGTCGGTTTTCATTTGAAGAGGAGGAGACAATTATTCAGCTACATAGCATTCTTGGCAACAAGTGGTCTGCGATTGCATCTCGCTTACCAGGAAGAACAGACAATGAAATCAAAAACTATTGGAACACTCACATCAGAAAAAGGCTTTTGAGGATGGGAATTGATCCTGTGACACACAGTCCAAGACTTGACCTTTTGGACCTCTCTTCCATTCTATGCTCATCTCTCTATGGTTCATCATCACAAATGAACATACAGAGGCTCCTTGGCATGCACTCTATGGTGAATCCAGAGCTTCTAAAGTTGGCTTCCTCACTCATCTCCTCTCAGCAACGTGAAGACCTCAACTTGTGTGACCAAAACGGTCAACAGAACCAGCTCTGCAATTCCCAAATCCAGAATCAAACTCCACGTTTTGTCCAATTTCAAGACACAATTCAAGAAGTACCAGCTTGTGTTTCATTGCCTTTAACTCAACCACAATTGCTTGAACCCACTATGGATCACCAATATGATCCATCAAGTAATTTCACCGATTTTAGTAATTGGGACAAAAATGGAACCTTAACAGATGATCACTATATCCCTCAATTATCAAGCTGCTATAATGATTATTATAGTTCTGATAATCAGAATCTCATGTATCCTCCATTGTCCGAAACTTCAACCTTCCATTCCAATAACTTGAGCAGCTTCACTTCAGTGCTATCCACGCCATCTTCTAGTCCCACACCGTTGAATTCGAACTCCACGTATATCACCGGGAGCAACACAGAGGATGAGAGAGAAAGCTATGACAGTAGTAACATGTTGAAATTTGAAATCCCAGATATTCTAGATGTGAATGAGTTCATGTAA 1059 0.4164 MGRTPCCDKNGLKKGPWTTEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILCSSLYGSSSQMNIQRLLGMHSMVNPELLKLASSLISSQQREDLNLCDQNGQQNQLCNSQIQNQTPRFVQFQDTIQEVPACVSLPLTQPQLLEPTMDHQYDPSSNFTDFSNWDKNGTLTDDHYIPQLSSCYNDYYSSDNQNLMYPPLSETSTFHSNNLSSFTSVLSTPSSSPTPLNSNSTYITGSNTEDERESYDSSNMLKFEIPDILDVNEFM. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05174 352 CDD SANT 69 112 IPR001005 -
Seca5g05174 352 Gene3D - 69 116 - -
Seca5g05174 352 MobiDBLite consensus disorder prediction 303 334 - -
Seca5g05174 352 CDD SANT 16 61 IPR001005 -
Seca5g05174 352 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca5g05174 352 SMART sant 13 63 IPR001005 -
Seca5g05174 352 SMART sant 66 114 IPR001005 -
Seca5g05174 352 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 267 - -
Seca5g05174 352 FunFam Transcription factor MYB39 69 130 - -
Seca5g05174 352 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca5g05174 352 Gene3D - 13 66 - -
Seca5g05174 352 FunFam MYB-related transcription factor 13 66 - -
Seca5g05174 352 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca5g05174 352 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca5g05174 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca5g05174 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca5g05174 352 MobiDBLite consensus disorder prediction 303 325 - -
Seca5g05174 352 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05174 Seca-Chr5 108945747 108947523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05174 1 352 MYB Transcription Factor Family AT4G21440 57.766 1.42e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca5g05174 Myb_DNA-binding 6.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05174 K09422 - gmx:778071 511.916