Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05167 ATGGGTGATGAACAACAAGAAGCCACCGTCAAGCTCATCTCTTCCTTGATCTCCCTCTCTCACTCGATTAGGGTCTTCGCTGGAAAATGGCAACTGATACGGAACAAGCTGGAGGAGCTTCATTCGGGACTAACCGCCGGCGAGAACCAGTCACTCACCGGCGTGTTCCCGGCGATAGCTGCCACCGTGGAGGAGTGCCACGAGCTGGCTCGGCGGTGCGTGGATCTGTCGTACAGCGGGAAGCTGCTGATGCAGAGCGATTTGGATGTGACTTTGGGGAAGTTGGAGGGGCACGTGAAGAAGCTCTCTGAGATATACAAGAAGGGTATTCTCTCAAATGGGTATGCTGTGGTTGTTTCAAGGCCTTGCCTTGGTGCTTCCAAAGACGACATGAGGTTCTACCTCAGGGACTTGCTCACTAGGATCAAAGTGGGTGATTTCGGTATGAAGAAGCAGGCTTTGATCAACCTGCATGAGATTGTTCTCCAAGATGACAAGTATGTCATGTTGATTCTGCAAGTTGCTGACTTTGTTCATGTGTTGTTGGATTTTCTGGGTTCCCCTGAGATTGAGATTCAGGAGGAATCTGCCAAGGTGGTTTCTGTCATTGTGGGGTTTGATTCTTGTAAAGGGGTTTTGATTGCTGCTGGGGTTATTGCTCCCTTGATTCGGGTTTTGGAATGTGGGAGTGAGTTGGGGAAGGTTGGTGCTGCTAGGTGTTTGCACACGTTGACTGAGAATTCAGATAATGCTTGGTCTGTTTCAGCGCATGGGGGTGTCACCGCCTTGTTGAAGATTTGTGAAAGTTCGGATTCTAAAGGGGAATTGATTGGTCCTATTTGTGGGGTGTTGAGGAATCTTGCTGGTGTTGAAGAAATAAAGAGGTTTATGGTTGAGGAGGGTGTGGTTTCCACGTTTATCAGGCTTGTGAGATCCAAGGATGAAACCATTCAGGTAAGTTCCATAGAGTTCACTCAAAACATTGCCTCTGGGGATGAATTGGTTAGGCAGGTGGTGATTAGGGATGGTGGGATTCGTGTCTTCTTACGTGTTTTGGATCCTAAATGGACGTGTTCTTCTAAAACCAGAGAGGTGGTGATGAGGGCTGTTGAAAATTTGTATTTTTCTTCACCCGGTTCTATAAGTATTTTGATGAGTTATGGCTTTGTGGATCAACTGCTATATTATGTTAGAAATGGGGAGGTTTCAATTCAAGAGTTGGTGCTTAAAGTGGCATTTAGACTGTGTGGAACTTCAGAGGAGGCTAAGAAAGCGTTGGGTGATGCAGGCTTCATGGCAGAGCTTGTTAAGTTTCTAAATGCAAAATCATTTGAAGTTCGTGAAATGGCAGCTGAGACACTATCTGGCATGGTTATGGTGCCAAAAAATAGAAAGAAATTTGTGCAGGATGACCAAAATATTGCTCTCCTTCTGCAATTGCTAGACCCAGAGGAGGGAAACTCAGGTAATAAAAAGTTCTTAATCTCTATCTTAATGTCATTAACAAGTTGCAACAGTGGGAGGAAAAAGATTGTTAGTTCTGGGTATGCCAAAAACATAGAGAGACTTGCAGAAGCTGAAGTTTCTTCTGATGCCAAGAGGCTTGTGAGGAAGCTATCCACAAACCGATTCCGCAGTATGTTGAGTGGAATCTGGCACTCTTGA 1665 0.4565 MGDEQQEATVKLISSLISLSHSIRVFAGKWQLIRNKLEELHSGLTAGENQSLTGVFPAIAATVEECHELARRCVDLSYSGKLLMQSDLDVTLGKLEGHVKKLSEIYKKGILSNGYAVVVSRPCLGASKDDMRFYLRDLLTRIKVGDFGMKKQALINLHEIVLQDDKYVMLILQVADFVHVLLDFLGSPEIEIQEESAKVVSVIVGFDSCKGVLIAAGVIAPLIRVLECGSELGKVGAARCLHTLTENSDNAWSVSAHGGVTALLKICESSDSKGELIGPICGVLRNLAGVEEIKRFMVEEGVVSTFIRLVRSKDETIQVSSIEFTQNIASGDELVRQVVIRDGGIRVFLRVLDPKWTCSSKTREVVMRAVENLYFSSPGSISILMSYGFVDQLLYYVRNGEVSIQELVLKVAFRLCGTSEEAKKALGDAGFMAELVKFLNAKSFEVREMAAETLSGMVMVPKNRKKFVQDDQNIALLLQLLDPEEGNSGNKKFLISILMSLTSCNSGRKKIVSSGYAKNIERLAEAEVSSDAKRLVRKLSTNRFRSMLSGIWHS. 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05167 554 Gene3D - 135 543 IPR011989 -
Seca5g05167 554 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 553 - -
Seca5g05167 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 258 302 IPR000225 GO:0005515
Seca5g05167 554 SMART arm_5 332 375 IPR000225 GO:0005515
Seca5g05167 554 SMART arm_5 290 330 IPR000225 GO:0005515
Seca5g05167 554 SMART arm_5 419 459 IPR000225 GO:0005515
Seca5g05167 554 SMART arm_5 206 246 IPR000225 GO:0005515
Seca5g05167 554 SMART arm_5 247 289 IPR000225 GO:0005515
Seca5g05167 554 SMART arm_5 164 205 IPR000225 GO:0005515
Seca5g05167 554 SUPERFAMILY ARM repeat 129 524 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05167 Seca-Chr5 108889598 108891262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05167 118 406 U-box Gene Family AT2G23140 21.649 1.00e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05167 - - gmx:100783537 881.708