Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05166 ATGAACAATAATTTAAATGGGACAGAAGAATTTGCCGTGGACTATGACTACCTAATTATCGCCGTGGGCGCTAATGTTAATACATTTAATACACCAGGAGTGGTGGAGAATTGCCATTTTTTGAAGGAAGTTGAAGATGCTCAGAAGATTAGAAGAACAGTTATTGACTGCTTTGAGAGAGCTAATTTGCCTGATGTAAATGAAGAAGAGAAGAAGAGAATTCTTCATTTTGCTATTGTTGGAGGTGGACCAACTGGAGTGGAGTTTGCAGCCTCACTTCATGACTTTGTCAATGAGGATTTGGTCCGTTTATATCCCGGGATAAAAGATTTAGTTAAAATTACACTTCTGGAGGCCGGAGACCATATCTTGAGCATGTTTGACAAAAGAATCACTGCTTTTGCTGAAGACAAGTTTGGAAGAGATGGGATTGTTGTGAAAACAGGATCCATGGTTGTGAAGGTAGATGAGAAGGAAATTTCCACTAAAGAACTGAAAAATGGAGGAGAGATAACTAAAATTCCATATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTTATGACACAAATTGGTCAGAATTATTTACTCAGCATTGTATCTTCTGAACAGACTAGCAGGCGTGCTCTAGCTACTGATGAATGGTTGAGAGTTGAGGGATGCAACAATGTGTATGCTCTGGGTGATTGTGCTACCATAAACCAGCGAAAAGTCATGGAAGATATTACAGCGATCTTTAAGAAGGCTGACAAAGACCATTCTGGAACACTTACTGTCAAAGAATTTCAAGAGGTGATGGATGACATCTGTGAAAGATACCCTCAGGTGGAGCTATATCTGAAGAGTAAACAGATGCGTGACATTGCTGATTTGTTGAAGGAAGCCAAGGGAGATGTTAAAAAGGAATCAATTGAACTCAATATCGAAGAACTCAAAACAGCACTTTCCAAAGTGGATTCTCAGATGAAATTTCTTCCTGCTACAGCGCAGGTTGCATCTCAGCAAGGCACTTACCTGGCCAAATGTTTTAACCGGATGGACGAGTGTGAAAAAAGTCCTGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCGTCATCGTTTCAAACCCTTCAGGTACAAGCACTTGGGTCAATTCGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGGGATTGGGTTTCAATTGGCCACAGCAGTCAATGGCTGTGGTATTCTGTGTATGCAAGCAAGCAAGTAAGCTGGCGTACAAGGGCGTTAGTAGTTACAGACTGGACAAGACGTTTTATTTTTGGGAGGGACTCAAGTCGCATTTGA 1341 0.4206 MNNNLNGTEEFAVDYDYLIIAVGANVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERANLPDVNEEEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVRLYPGIKDLVKITLLEAGDHILSMFDKRITAFAEDKFGRDGIVVKTGSMVVKVDEKEISTKELKNGGEITKIPYGMAVWSTGIGTRPFIKDFMTQIGQNYLLSIVSSEQTSRRALATDEWLRVEGCNNVYALGDCATINQRKVMEDITAIFKKADKDHSGTLTVKEFQEVMDDICERYPQVELYLKSKQMRDIADLLKEAKGDVKKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMDECEKSPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFIFGRDSSRI. 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05166 446 SMART efh_1 248 276 IPR002048 GO:0005509
Seca5g05166 446 SUPERFAMILY EF-hand 216 328 IPR011992 -
Seca5g05166 446 Gene3D - 1 281 - -
Seca5g05166 446 Gene3D - 287 445 - -
Seca5g05166 446 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 290 445 - -
Seca5g05166 446 Pfam Pyridine nucleotide-disulphide oxidoreductase 7 248 IPR023753 GO:0016491
Seca5g05166 446 SUPERFAMILY FAD/NAD(P)-binding domain 13 242 IPR036188 -
Seca5g05166 446 ProSiteProfiles EF-hand calcium-binding domain profile. 244 279 IPR002048 GO:0005509
Seca5g05166 446 Pfam EF hand 249 274 IPR002048 GO:0005509
Seca5g05166 446 Coils Coil 308 328 - -
Seca5g05166 446 SUPERFAMILY FAD/NAD(P)-binding domain 11 184 IPR036188 -
Seca5g05166 446 PANTHER NADH DEHYDROGENASE 8 446 IPR045024 GO:0003954|GO:0006116
Seca5g05166 446 ProSitePatterns EF-hand calcium-binding domain. 257 269 IPR018247 -
Seca5g05166 446 PRINTS FAD-dependent pyridine nucleotide reductase signature 15 33 - -
Seca5g05166 446 PRINTS FAD-dependent pyridine nucleotide reductase signature 76 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05166 Seca-Chr5 108878243 108884986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05166 4 446 Chloroplast and Mitochondria Gene Families AT4G21490 76.126 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05166 K03885 - gmx:100802661 810.446