Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05163 ATGAATAGACAAAATATAGGTCCTCCCCATGCTTGTCCTCTATGCAGGCGTCAACGCAGAAGATCTGGATGCGATGGCAACTGTGAGTTTGGGCGATACTTCCCTGCCAATAGAGTAGAAGAATTTGAAAATGCATTCAGGCTTTTTGGTGTGAACAACATGCTGAGGATTTTGCGGACGGTAGAACCTCAGCAAAGGCAAGCTGCTGCAGATTCTATAATGATAGAGGGCACTGCATGGAGAAATAACCCTCCTCATGGTATACTTGGTCATGAGTTGGAACTTAGATCACAGATTCGATCTTCTTTCAGGGAATTGCAATCTGTAAACCAACTCCTTTCATTTTTCAGAAATCAAGCCACAGGAGGGCCAAACCCTAACATGCAAATGGGTAACACTTCTCAACCTGTTGGTGTAGCCACACAATTGTCCACCTTGGCTGCAGGAACAGTAAGCCTTCTTCTTTTTTTTTTTATTTATCATAAAAATATATACTATTTAATTTAA 507 0.4142 MNRQNIGPPHACPLCRRQRRRSGCDGNCEFGRYFPANRVEEFENAFRLFGVNNMLRILRTVEPQQRQAAADSIMIEGTAWRNNPPHGILGHELELRSQIRSSFRELQSVNQLLSFFRNQATGGPNPNMQMGNTSQPVGVATQLSTLAAGTVSLLLFFFIYHKNIYYLI. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05163 168 ProSiteProfiles LOB domain profile. 10 113 IPR004883 -
Seca5g05163 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 128 - -
Seca5g05163 168 Pfam Lateral organ boundaries (LOB) domain 11 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05163 Seca-Chr5 108859214 108859720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05163 11 130 AS2 family AT3G13850 36.885 3.20e-20 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca5g05163 LOB 1.7e-21 No_clan