Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05158 ATGGCGTCTGCTTCGTCCTCTTCTTCCTCCCCCAAGCTGTGCTTCAATTCTGACTGCAAAGAATTGAAGTCTGAAAGACCTAAGAAAGGTTGGAGGCTCCGTAACGGAGACCTAGCCGAGCTTTGCGATCGATGCGGTTCCGCTTTTGAAGAAGGGAGGTTCTGTGAGATTTTTCACTCTAATGCTTCAGGTTGGAGAAATTGTGAGACTTGTAGGAAGCGGATTCATTGTGGGTGTATTGTTTCAAGTCACGCCTTTGTGTTGTTGGATCCTGGAGGAATTGAATGCTTTGCATGTGCCCGCAAAAATATTATTTTGCCGTCTAACCTGCCGTGGTCACAATCCTTTTCCCTTCAAAATCGTATATCGGAGAGACTTAGAGACCTGTCTGCCAAAAGTTGGAATCAGTTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGTCTGTTCAATTCAGCTTCTTCCTCTGACCTGCTTCCAGATGTGCCCTCTCTAGTTGAATTACCAAATAGCTTTGAAAAAATTTATAGCAATGAAAGGTTACCTGCCTCGTCCTTGGAAAAGAAAAATGAGGATTTGTCTGGAATACCAGTTAATTGGAGCGTCAAGCTTGGTTCACGGGAAATGATGCTTATGAATGGTTTGAGGAATGAGGACAAATCAAGTTCTTGTTTAAATATGTGCCAACAGCCTTCTATGAAGGAAGATTCATCTCCTCAACCATTTGGTTTGTCTGTACCTTATTCATCCCCAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAAGTCATCCACAACAAACTCCACCTCCTCCAGGAAAGCAATTCAGTGGCACTATGCATTTAGCACTTGACACATCTGGTGAAGCTCAAGTTCGCAATGGGCGGCCTCGAGCAGATGCCCGAGGAAGAAACCAGTTACTGCCACGGTACTGGCCGAGGTGTACTGATCTGGAACTACAGCAAATATCTATTGATTCTAATTCTGTAATTACACCCTTGTTTCAAAAAACATTGAGTGCTAGTGATGCTGGAAGAATTGGACGTTTAGTGCTACCCAAAAAATGTGCTGAGACCTACTTTCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAGTTTCGCTTCTGGCCAAACAATAATAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAAGCAGGTGACACAGTAACATTTAGCCGGTTGGAGCCAGAAGGGAGGTTAGTTATGGGATTTAGAAAGGCTTCAAGTGCTATGCCATCTGATCAGGATAATGAAACTAATAAGACTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCTGATCCTAATTCATGGTCTAAAGTTGATAAGTCAGGATATATAGCAAAAGAAGCACTGGGGAGCAAATCTTTAATCTCTAGAAAGAGAAAGAGCAGCATATTGGGTTCAAAGAGTAAACGTCTAAAAATTGAAAATGAGGATGTAATAGAGCTGAAAATTACATTGCAAGAAGCTCAAGGCCTGCTCCGCCCCCCTCCTAACCATGTTCCAAGTATTGTGGTGATTGAAGGTTTTGAATTTGAGGAGTATGAGGTACCTGTCTTCTTGCTTCATTTCAGAAATTATTTTGAACTGCTAATGTTATTATACTTTTAA 1710 0.4228 MASASSSSSSPKLCFNSDCKELKSERPKKGWRLRNGDLAELCDRCGSAFEEGRFCEIFHSNASGWRNCETCRKRIHCGCIVSSHAFVLLDPGGIECFACARKNIILPSNLPWSQSFSLQNRISERLRDLSAKSWNQLAGSGPVPWKQAPSLFNSASSSDLLPDVPSLVELPNSFEKIYSNERLPASSLEKKNEDLSGIPVNWSVKLGSREMMLMNGLRNEDKSSSCLNMCQQPSMKEDSSPQPFGLSVPYSSPNERNGQIGVTGSHPQQTPPPPGKQFSGTMHLALDTSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAMPSDQDNETNKTGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSSILGSKSKRLKIENEDVIELKITLQEAQGLLRPPPNHVPSIVVIEGFEFEEYEVPVFLLHFRNYFELLMLLYF. 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05158 569 ProSiteProfiles B3 DNA-binding domain profile. 337 438 IPR003340 GO:0003677
Seca5g05158 569 SMART B3_2 337 438 IPR003340 GO:0003677
Seca5g05158 569 FunFam B3 domain-containing transcription repressor VAL1 315 442 - -
Seca5g05158 569 Pfam B3 DNA binding domain 337 436 IPR003340 GO:0003677
Seca5g05158 569 MobiDBLite consensus disorder prediction 232 278 - -
Seca5g05158 569 MobiDBLite consensus disorder prediction 232 266 - -
Seca5g05158 569 MobiDBLite consensus disorder prediction 438 459 - -
Seca5g05158 569 MobiDBLite consensus disorder prediction 440 456 - -
Seca5g05158 569 CDD B3_DNA 335 436 IPR003340 GO:0003677
Seca5g05158 569 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 12 553 - -
Seca5g05158 569 Gene3D - 315 441 IPR015300 -
Seca5g05158 569 SUPERFAMILY DNA-binding pseudobarrel domain 334 437 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05158 Seca-Chr5 108793553 108802421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05158 12 555 B3 DNA Binding Superfamily AT4G21550 42.397 6.69e-134 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca5g05158 B3 6.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05158 K09287 - gmx:100782114 1020.38